RNA id: AMCG00016211


Basic Information

Item Value
RNA id AMCG00016211
length 481
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00016211
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12323161 ~ 12329033 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGAAGGGTGCCCGTCAGGTTGGTGCTATAATGAATAGAATGGAGGAGGGGGATCCAATCCGGTTTGAGCTAGTTTTTGTTCCGATGGAATATTAACGTCTAGCTAGACTGCTTTACAAGGTAGTCCTGGTTGGATCTTTTACTGGACATAGTAGTGcattaggtgtttttttttcggCCTCTACGTTAGTGAAAACTTAATTATTTGACATTGTTTGgggtttttttttcataaagaaaaaaagaaagaaaaccagcCATGCCGAAAAGAAACAATaaaaccaCTGAGACTGAAGCAAATGAGccCAAGAGGAGATCGGAACGGTTGCAAAATAAACCTTCTCAACCAAAGGCAGAACCCAAGCCAaagcAAAAGGTGCCGGCAAAACCCAAGAAAGCAAAGGTGAACGATGATGCTAagcaggaggagaagaagaaggaagatGTTCCTGCAGAGAACGGAGAAGCCAAAGCTGATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14816 lncRNA downstream 85808 12238785 ~ 12239014 (-) True G11996
TU14772 lncRNA downstream 377500 11832428 ~ 11947322 (-) False AMCG00016203
TU14773 lncRNA downstream 416853 11890988 ~ 11907969 (-) False AMCG00016203
TU14679 lncRNA downstream 558245 11766152 ~ 11766577 (-) False AMCG00016194
TU14659 lncRNA downstream 586223 11738345 ~ 11738599 (-) True G11865
TU14864 lncRNA upstream 24718 12353160 ~ 12353381 (-) True G12041
TU14871 lncRNA upstream 26233 12354675 ~ 12355364 (-) True G12046
TU14892 lncRNA upstream 59356 12387798 ~ 12391408 (-) True G12058
TU14937 lncRNA upstream 310051 12638493 ~ 12638698 (-) True G12096
TU15107 lncRNA upstream 769549 13097991 ~ 13100224 (-) True G12235
AMCG00016209 mRNA downstream 4166 12296853 ~ 12320656 (-) True AMCG00016209
AMCG00016210 mRNA downstream 28762 12264274 ~ 12296060 (-) True AMCG00016210
AMCG00016208 mRNA downstream 88300 12208148 ~ 12236522 (-) True AMCG00016208
AMCG00016204 mRNA downstream 381170 11906076 ~ 11943652 (-) True AMCG00016204
AMCG00016203 mRNA downstream 419988 11890988 ~ 11904834 (-) True AMCG00016203
AMCG00016212 mRNA upstream 32133 12360575 ~ 12376528 (-) True AMCG00016212
AMCG00016217 mRNA upstream 144821 12473263 ~ 12499001 (-) True AMCG00016217
AMCG00016216 mRNA upstream 185916 12514358 ~ 12531045 (-) True AMCG00016216
AMCG00016219 mRNA upstream 274442 12602884 ~ 12607201 (-) True AMCG00016219
AMCG00016227 mRNA upstream 399672 12728114 ~ 12734030 (-) True AMCG00016227
TU14520 other downstream 1477011 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 1477011 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 4130390 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 8404398 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 8785629 3529252 ~ 3539193 (-) False AMCG00016046
TU15028 other upstream 533657 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 533657 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 541398 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 1226143 13554585 ~ 13559184 (-) False AMCG00016246
TU15638 other upstream 2461761 14790203 ~ 14791969 (-) False AMCG00016293

Expression Profile