RNA id: TU14856


Basic Information

Item Value
RNA id TU14856
length 2135
RNA type TUCP
GC content 0.41
exon number 6
gene id AMCG00016211
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12323161 ~ 12329033 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAAAATGAGGTCTTGGACGCgatctctctctcattgtgcCAATACACTGTCAAAGAAACTGCGTTAAAACGACCCTACTTACAAGGGAGGACACAGTCGGCAGGAGCGTTTTTACGAGATTGCACAAAAGGACGGATCCCAGCACCAGAATCCAAGCGCAGCCGTCCGCCATGTTTGCCCCCTTATTGCTGTGCGCGGCTGGGCGCCGAGGACACACGCAGTCACTGCGCTTCACAGCgcagacgcagacgcagacgcagacGCAGCCTGTAGTCTGAAGCATTTAGCCATTCCTGCGCGCAACGCAGATGTCTGTGtgggagaaggggaggggggacaacaacaacatgtgGCTGACTTTCGAGAAGCTTAGTGGCTGCGGCTGTGAGGCAGATCTACAGTTCATCCGAAAAAAACAATAACGGCCACTTATTTAGCATTTTACGTGTAGTAATTCTCCTCCCCCctaaaaaaacagaaggaaaatatcGGGCTGATTGGCGTAGTAACCTACCCACACAGGTGTCttgctttgatttaaaaatgtgttgacgACTCCTAAAGGCCAATCAATGGCAACAGGGGGCGGAGAGAAGGGTGCCCGTCAGGTTGGTGCTATAATGAATAGAATGGAGGAGGGGGATCCAATCCGGTTTGAGCTAGTTTTTGTTCCGATGGAATATTAACGTCTAGCTAGACTGCTTTACAAGGTAGTCCTGGTTGGATCTTTTACTGGACATAGTAGTGcattaggtgtttttttttcggCCTCTACGTTAGTGAAAACTTAATTATTTGACATTGTTTGgggtttttttttcataaagaaaaaaagaaagaaaaccagcCATGCCGAAAAGAAACAATaaaaccaCTGAGACTGAAGCAAATGAGccCAAGAGGAGATCGGAACGGTTGCAAAATAAACCTTCTCAACCAAAGGCAGAACCCAAGCCAaagcAAAAGGTGCCGGCAAAACCCAAGAAAGCAAAGGTGAACGATGATGCTAagcaggaggagaagaagaaggaagatGTTCCTGCAGAGAACGGAGAAGCCAAAGCTGATGAGGCACCAGCTTCAGAAGAATCGGACCAGAAAGATGGAGAGACGGAATAACATCCCTTTACCATGTCTTTTACCAGTGCTCCCTGTACCTCTTTTCTTGTACAATTTCAGAGGAATATTTTTATCTACTATTTTCTAAATGCAAGTTTTTTAGTAGTTTGATtgtagaaacacatttttttaagaagcaaaataaatttgGAAAGGGATTCCACCACATCCCACATTTTTACATCTCTGGAGGAAAAACTATTATCATTGTAAATGtctaggtttttatttttaacggggagggaatggggggggggggcggttgCAGAATGGATTACATGCAATCATGTCGTTTTCAGGATCCTATTGTACAACATGGAGAGAGCTGCCTGAGAGAGTAACATTCCGTAGGCTAAGAGGGACATTTTATGTAACCTATATTtgaatggagaaaaacaaaaaaagaagaattatTTGATGGGAAAGGGGGGGGCAcgcattgttttattgtttataaaaaaaaagttttagaatGTTTGTAAACTGTATTCTATAAATGTTAACTTGTACCCATGCAGTTTTTTGAATCGATCGTTCTGCTTAATAAACCTATTCCCTAGTACTGGAGTTCTCCCTTTCAAAACTGTGCATTGCGTGTGTTGTCTGTTTGTTGGTGATAGCCTTTGCAATAACATTGTATAACTGCTGTGaaagggtttaaaaaataaataaaaaaaatctatatgcGGTGTGTTATGGTACGTTGTAAGGATGGTAAAATGGGATATTTCTGTGTTCTTAGCAAAGCTAATAACTTGACATGCATAACAGTGTTAAACATACTGGTGGTATCTGTTCCTTTGACAGATAATGATAAGCAAATGACTGTACCATCACTTGAGCTGTCAAGTGATCTTACCAGCAGTAGCAATATCTACATGTGGTTTTTAGATAACAAGTACAAATgtacagatttttgttttgttctttgtttataGCTGTGTCTGTGTAATGATGGGTATAAAAGAAccaataaaaagaagaaatggttatacattattttgtggaaGTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14816 lncRNA downstream 84147 12238785 ~ 12239014 (-) True G11996
TU14772 lncRNA downstream 375839 11832428 ~ 11947322 (-) False AMCG00016203
TU14773 lncRNA downstream 415192 11890988 ~ 11907969 (-) False AMCG00016203
TU14679 lncRNA downstream 556584 11766152 ~ 11766577 (-) False AMCG00016194
TU14659 lncRNA downstream 584562 11738345 ~ 11738599 (-) True G11865
TU14864 lncRNA upstream 24127 12353160 ~ 12353381 (-) True G12041
TU14871 lncRNA upstream 25642 12354675 ~ 12355364 (-) True G12046
TU14892 lncRNA upstream 58765 12387798 ~ 12391408 (-) True G12058
TU14937 lncRNA upstream 309460 12638493 ~ 12638698 (-) True G12096
TU15107 lncRNA upstream 768958 13097991 ~ 13100224 (-) True G12235
AMCG00016209 mRNA downstream 2505 12296853 ~ 12320656 (-) True AMCG00016209
AMCG00016210 mRNA downstream 27101 12264274 ~ 12296060 (-) True AMCG00016210
AMCG00016208 mRNA downstream 86639 12208148 ~ 12236522 (-) True AMCG00016208
AMCG00016204 mRNA downstream 379509 11906076 ~ 11943652 (-) True AMCG00016204
AMCG00016203 mRNA downstream 418327 11890988 ~ 11904834 (-) True AMCG00016203
AMCG00016212 mRNA upstream 31542 12360575 ~ 12376528 (-) True AMCG00016212
AMCG00016217 mRNA upstream 144230 12473263 ~ 12499001 (-) True AMCG00016217
AMCG00016216 mRNA upstream 185325 12514358 ~ 12531045 (-) True AMCG00016216
AMCG00016219 mRNA upstream 273851 12602884 ~ 12607201 (-) True AMCG00016219
AMCG00016227 mRNA upstream 399081 12728114 ~ 12734030 (-) True AMCG00016227
TU14520 other downstream 1475350 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 1475350 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 4128729 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 8402737 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 8783968 3529252 ~ 3539193 (-) False AMCG00016046
TU15028 other upstream 533066 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 533066 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 540807 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 1225552 13554585 ~ 13559184 (-) False AMCG00016246
TU15638 other upstream 2461170 14790203 ~ 14791969 (-) False AMCG00016293

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004454 True 1739 lncRNA 0.40 6 NC_007121.7 39084012 ~ 39087853 (+)
rainbow trout (Oncorhynchus mykiss) TU254011 False 2368 lncRNA 0.39 3 NC_048567.1 9118840 ~ 9121329 (-)
eurasian perch (Perca fluviatilis) TU230450 False 1340 TUCP 0.41 6 NC_053127.1 30411251 ~ 30414693 (-)
tiger barb (Puntius tetrazona) TU230450 True 466 lncRNA 0.35 1 NC_056721.1 7482027 ~ 7482492 (-)
tiger barb (Puntius tetrazona) TU254011 False 839 TUCP 0.44 6 NW_025047682.1 1159956 ~ 1163063 (+)
mexican tetra (Astyanax mexicanus) TU236173 False 1440 TUCP 0.40 7 NC_035916.1 8548953 ~ 8552609 (+)