RNA id: AMCG00016216


Basic Information

Item Value
RNA id AMCG00016216
length 1845
RNA type mRNA
GC content 0.58
exon number 8
gene id AMCG00016216
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12514358 ~ 12531045 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTAGATTTCTCATTACATCCACGGGAGCCTTGTATATTTTGGATGTACAGAATGAAGACGGATTGTATAACTACCGCTGTATCACACGGCATCGATACACGGGGGAGACCAGGCAAAGCAACAGTGCGCGTCTCTTTGTGTCAGACCCAACAAACTCCGCACCAGTGATCCTCGATGGCTTTGACCGGCGGGACGTGATGGCCTCTCAGCGGGTGGAGCTCCCCTGCAAAGCCTCAGGACATCCCGCCCCAACATACCGCTGGCTGAAGAACAACAGCCCTCTGGAGCCGGACAGCCGCTTCCGGCAAAGCATCACTGGCTTGCTGATTGAGAACGCGCAGTCCGGCGACTCCGGTGACTATGTGTGTGAAGTGTGGAACAACTACGGCAACGCGGACTTCATCGGACACCTGTTGGTGGAGCAGCCCCTGAAGGCAGTGGTCAGCCCTCGCAAGGTGAAGGGCAGCGTGGGAAGCCAGGTGTCCCTGTCATGCAGTGTGAGTGGCACCAAGGACTACGAGCTCTTCTGGTACCGCAACGGTGAGATCATCAACCCGGGCAACAGCGTGAGAATCACCGGGAACAACCGTGAGACGCTGGTGATGGAGGGCATGGCCAAGAGCGATGGTGGGGCCTACCAGTGCTTCGCCAGGAAGGGCAAGATGTCGGCCCAGGACTTCGTACAGGTCATACTAGAAGATGGTACTCCAAAGATCCTGTCTGCCTTCAGTGAGAAGGTGGTGAGCCCCAATGAGGCGGTGTCCCTCATGTGCAACGTAAAGGGGACGCCCCTGCCCACCATCACCTGGACGCTGGACGACGACCACATCCTGAAAGACGGCAGCCATCGCATCAACCAGGTCATCTCCACCGAGGGGGACGTGCTGAGCTACCTAAACATCTCCAACACCCATGTCCGCGACGGGGGCGTCTACCGCTGCACAGCCAACAACTCAGCCGGAGTGGTCACCTACCAGGCTCGAATAAACGTAAGAGggCCTGCCAGCATCCGCCCAATGAAAAACATCACAGCCATTGCCGGGCGGGACACGTACATCCACTGCCGTGTGATTGGCTACCCGTACTACTCCATCAAATGGTACAAGAACTCCAACCTGCTGCCCTTTAACCACCGGCAGCGAGCCTTCGAGAACAACGGCACCCTGAAACTGTCCGACGTGCAGAAGGAGGTGGACGAGGGTGAATACACCTGCAACGTGCTGGTGCAGCCCCAGCTGTCCACCAGCCAGAGTGTCCATGTCACTGTGAAAGTGCCCCCTTTCATCCAACCCTTCGAGTTCCCCCGCTTCTCCATCGGCCAGCGTGTCTTCATCCCTTGCGTGGTTGTCTCCGGCGACCTGCCCATCACCATCACCTGGCAGAAAGACGGGCGGCCAATCCCAGCCAGCCTCGGCGTGACCATTGACAACATCGATTTCACCAGCTCCCTGCGCATCTCCAACCTGTCGCTGATGCACAACGGCAACTACACCTGCATCGCCCGCAACGACGCGGCGGCCGTGGAGCACCAGAGCCAGCTGATCGTGAGGGTGCCTCCAAGGTTTGTGGTTCAGCCCAGCGATCAAGATGGGATTTATGGCAAAGCTGTAATCCTGAACTGCTCTGCTGAAGGTTACCCTGTCCCCACCATCGTGTGGAAATATTCCAAAGGGGCCGGTGTGCCACAGTTCCAGCCCATCGCTCTGAACGGCCGCATCCAGCTGCTGGTGAATGGCTCCCTCCTGATCAAGCATGTCCTGGAGGAGGACAGTGGCTATTACCTGTGCAAGGTCAGCAACGACGTGGGAGCCGACGTCAGCAAGTCCATGTACCTCACCGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14892 lncRNA downstream 122950 12387798 ~ 12391408 (-) True G12058
TU14871 lncRNA downstream 158994 12354675 ~ 12355364 (-) True G12046
TU14864 lncRNA downstream 160977 12353160 ~ 12353381 (-) True G12041
TU14816 lncRNA downstream 275344 12238785 ~ 12239014 (-) True G11996
TU14773 lncRNA downstream 606389 11890988 ~ 11907969 (-) False AMCG00016203
TU14937 lncRNA upstream 107448 12638493 ~ 12638698 (-) True G12096
TU15107 lncRNA upstream 566946 13097991 ~ 13100224 (-) True G12235
TU15219 lncRNA upstream 1012303 13543348 ~ 13545718 (-) False AMCG00016246
TU15249 lncRNA upstream 1096210 13627255 ~ 13639150 (-) True G12359
TU15247 lncRNA upstream 1107258 13638303 ~ 13639590 (-) False G12358
AMCG00016217 mRNA downstream 15357 12473263 ~ 12499001 (-) True AMCG00016217
AMCG00016212 mRNA downstream 137830 12360575 ~ 12376528 (-) True AMCG00016212
AMCG00016211 mRNA downstream 185916 12324822 ~ 12328442 (-) False AMCG00016211
AMCG00016209 mRNA downstream 193702 12296853 ~ 12320656 (-) True AMCG00016209
AMCG00016210 mRNA downstream 218298 12264274 ~ 12296060 (-) True AMCG00016210
AMCG00016219 mRNA upstream 71839 12602884 ~ 12607201 (-) True AMCG00016219
AMCG00016227 mRNA upstream 197069 12728114 ~ 12734030 (-) True AMCG00016227
AMCG00016223 mRNA upstream 207706 12738751 ~ 12743780 (-) True AMCG00016223
AMCG00016224 mRNA upstream 216884 12747929 ~ 12777926 (-) True AMCG00016224
AMCG00016228 mRNA upstream 255213 12786258 ~ 12792197 (-) True AMCG00016228
TU14856 other downstream 185325 12323161 ~ 12329033 (-) True AMCG00016211
TU14520 other downstream 1666547 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 1666547 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 4319926 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 8593934 3907759 ~ 3920424 (-) False AMCG00016049
TU15028 other upstream 331054 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 331054 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 338795 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 1023540 13554585 ~ 13559184 (-) False AMCG00016246
TU15638 other upstream 2259158 14790203 ~ 14791969 (-) False AMCG00016293

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000197_00079705_00119324.mRNA True 2307 mRNA 0.54 10 CI01000197 79705 ~ 119324 (+)