RNA id: AMCG00016219


Basic Information

Item Value
RNA id AMCG00016219
length 558
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00016219
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12602884 ~ 12607201 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCAGACCTGTCTGCCAAGGACACTTCACTCAGCTGCTGAAATGGCAGTCCAGCATTGTGGTGTGTGAAGATCTACGTTCCAGCTTATATTTTGTCAATGCATCTCTGCAAGAGGTAGTGTTCGCCAGCACCACAGGGACCCTGGTGCCCTGTCCTGCAGCAGGCGTGCCCCCGGCAACGCTGCGCTGGTACCTAGCGACGGGCGAGGAGATCTACGATGTCCCAGGGATCCGCCATGTCCACCCAAATGGCACTCTCCAAATCTTCCCCTTCCCTCCTTCAAGCTTTAGTAACTTAATCCATGATAACACTTACTATTGCACAGCTGAAAATCCTTCAGGGAAAATTAGAAGCCAAGATGTTCATATTAAGGCCGTTTTACGGGAGCCCTATACGGTCCGAGTGGAGGACCAGAAAGCCATGAGAGGCAATGTAGCGGTCTTCAAGTGCATTATCCCGGCCTCAGTGGAGGCCTACATTACTGTTGTGTCATGGGAGAAAGACACAGTCTCACTTGTCTCAGGTAGGAcactcttttcttttccctgtgGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14892 lncRNA downstream 211476 12387798 ~ 12391408 (-) True G12058
TU14871 lncRNA downstream 247520 12354675 ~ 12355364 (-) True G12046
TU14864 lncRNA downstream 249503 12353160 ~ 12353381 (-) True G12041
TU14816 lncRNA downstream 363870 12238785 ~ 12239014 (-) True G11996
TU14773 lncRNA downstream 694915 11890988 ~ 11907969 (-) False AMCG00016203
TU14937 lncRNA upstream 31292 12638493 ~ 12638698 (-) True G12096
TU15107 lncRNA upstream 490790 13097991 ~ 13100224 (-) True G12235
TU15219 lncRNA upstream 936147 13543348 ~ 13545718 (-) False AMCG00016246
TU15249 lncRNA upstream 1020054 13627255 ~ 13639150 (-) True G12359
TU15247 lncRNA upstream 1031102 13638303 ~ 13639590 (-) False G12358
AMCG00016216 mRNA downstream 71839 12514358 ~ 12531045 (-) True AMCG00016216
AMCG00016217 mRNA downstream 103883 12473263 ~ 12499001 (-) True AMCG00016217
AMCG00016212 mRNA downstream 226356 12360575 ~ 12376528 (-) True AMCG00016212
AMCG00016211 mRNA downstream 274442 12324822 ~ 12328442 (-) False AMCG00016211
AMCG00016209 mRNA downstream 282228 12296853 ~ 12320656 (-) True AMCG00016209
AMCG00016227 mRNA upstream 120913 12728114 ~ 12734030 (-) True AMCG00016227
AMCG00016223 mRNA upstream 131550 12738751 ~ 12743780 (-) True AMCG00016223
AMCG00016224 mRNA upstream 140728 12747929 ~ 12777926 (-) True AMCG00016224
AMCG00016228 mRNA upstream 179057 12786258 ~ 12792197 (-) True AMCG00016228
AMCG00016225 mRNA upstream 186607 12793808 ~ 12805884 (-) True AMCG00016225
TU14856 other downstream 273851 12323161 ~ 12329033 (-) True AMCG00016211
TU14520 other downstream 1755073 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 1755073 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 4408452 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 8682460 3907759 ~ 3920424 (-) False AMCG00016049
TU15028 other upstream 254898 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 254898 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 262639 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 947384 13554585 ~ 13559184 (-) False AMCG00016246
TU15638 other upstream 2183002 14790203 ~ 14791969 (-) False AMCG00016293

Expression Profile