RNA id: AMCG00016222


Basic Information

Item Value
RNA id AMCG00016222
length 4089
RNA type mRNA
GC content 0.48
exon number 28
gene id AMCG00016222
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12819590 ~ 12842680 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGAGAGCCTCCAGCCCGTCGCTGGCCGAACAGCTGCGGAAGATGCAGGCATTTCTGGGGCTCAGAGTTACTGGGAAGCTGGATTATAGCACAATGGAGATGATGCGAGCCCCCCGCTGTGGAGTCCCTGATGTGGAAAACTACCGGCTCTTCCCTGGGACGCCCAAGTGGAAATCCAACATCATAACTTACAGGATAGCAAAGTACACCTCTACCCTGCCAAGAGCTGAAGTGGATCATGCCATCGACATGGGCCTGAAAGCCTGGAGCAGCGTGACGcctctgcattttcaaaaaatcCAGAGAGGGGAGGCCGATATCATGATCTCCTTTGAAGTCGGAGCTCACGGAGACGCCTACCCTTTTGATGGACCCCGGGGGACTCTGGCTCATGCCTTCGCCCCAGCCGAGGGCCTGGGAGGAGACACGCACTTCGATGATGAGGAAAAATGGACCATGGGAACCAATGGATTTAACCTCTTCACAGTGGCTGCCCACGAGTTGGGCCACGCTCTGGGTCTGGCACACTCCAGTGACCCCTCAGCGCTGATGTTCCCAACTTACAAATACCAGGATGCCCGAGGCTTCACTCTACCCAGCGATGATGTGAAAGGCATTCAGGCTTTGTATGgtGCTACCACCAGAATAAACGAGAGACACGAGAAGCATGAGAAGGAGGACAATCACATGCCAGCCCCCCCATCTCCCAGCTGGCCAGTTAATCGCAGCCCGAACATGTGTGAGAATGACATGACCTTTGATGCTGTAACAGTTGTTGGAAATGAGTTGCTGTTCTTCAAGGAAGGCTATATGTGGCGGAGGCAGTCCCAGCTGACAGATGTCCGTCCCAGCTACATTCGCAGTTCCTTCCCTCAGCTGTTCACCAATGTCGATGCTGCTTATGAAGTCCCAGAGAAGGGGACTGCATATCTCTTTAAAGGGTCAAATTATTGGACATCAAGGGGTTTACAGACGATCGGAGGACCAAGATCCATCACAGACTTTGGTCTCCCAAGCAGAGTGAGACATGTGGATGCTGCTGTTTATCTCAAAGACACGAAGCAGACACTGTTCTTTGtgggaaatgatttatataGTTTCAATCAAGCAAATTCACAATTGGAGGAAGGCTATCCAAAGAAAATTGAAGAGGAGTTTTCAGGAATCAGGGGAAAAGTTGACGCTGCTGTTGAAGTGAATGGATTTCTGTACCTATTCTCAGGGCCCAATGCCTACAAATTGGACAGCGAGCGAGAGGACGTTATCCGCATTGAATTCCTGCAGCGTTTCTACAATCTGGAAGAGGGGCCTAGTAATCGTAGCAAGAGGAGCAGCGTGTCTTTTGCCTCCAAAGTGAGAGAGATGCAGGCGTTTTTTGGCCTCAATGTCACCGGTGCCCTCGATTCACAAACCATCAAAATCATGAAGACCCCGCGGTGTGGTCTTCCAGACGTACAGAACTACAGTCCACATGGCCAGGTCACAAGGTGGAAAAAGAACATCTTAACATATAGCATTGGACGGTACACCGAGGACTTGCCCACAGATACAGTGGATTCCCTTATCACTTCGGCCCTGCGAGTCTGGAGCGTTGTTAGCCCCTTGATTTTTCTCAGATCAGACTCTGGCAACGCAGATATCATGATTGAGTTTGGAACTTATGAGCACGGAGATTCCTTCCCATTCGATGGTCCACAAGGGACGCTGGCCCACGCATTCGGGCCGGGAGAAGGTATCGGGGGGGACACTCACTTCGATGATGATGAAAAGTGGACAGATGGATCAGAAGGGTTCAACTTGTTCCTAGTGGCGGCACATGAATTTGGCCATGCTTTGGGCTTAAGACATTCCAGACTTCCAGAATCTCTGATGTACCCCACGTACAAGATACGAAACCCTGCCAACCTGCTCTCCAGTGAAGACATACGACAGCTCCAGGCTCTGTATGGACCCAAAAGACGTATCCAAATGTATTATCCAAGATATgactggagtttttttttctctccacggCGTCACAAATCTGCTTTTCCAATTCAAGTTCAGGACAAATGTAACCCTGACATGTCATTTGATGCTGTAGCGAATTTGGGACAAGAcatcttgttttttaaagacagGTATACATGGATCAAACATGGGCAGCAACCGGATTTAAAAGAAAGACCCATCAATACCTTCATGTCAAACACTTACTCTGGCATTGATGCTGCATACTCTGTTCCCAAGCAATCATCCTTGTACCTGTTTAAAGGATCCAGCTATTGGACTGTGAAGCTGTCTCAAATGAAAAGCCGACCACAACCCATCTCTAAACTGGGATTCCCAAAGCAGCTGAGAAAGATTGATGCCGCTGTACACTTAAGCAAGACTGGAAACACACTCTTCTTTGCCAATGACAAGTACTGGAGttacaaTGAAACTACCAGAGCCATGGAAGACTTTTATCCCAGAAACATCATTGATGACTTCCCAGGGATTAACACCAAAATAAATGCGACCAGCGAGATAGAAGGCAAGTATCTTGTTCTAGAACAAGTTTCATCTACTTCTTTTGTGGAAGGGAAGTACATAAATACGACAATATCAAGAAGCAAGTGGTTCAGAATGTCGCCTTGGATTTCACTGCTATACCTACTGGGGAATTTTCAACTCTCATGGACTTTGCCTATTGCAGCTAAAGCAGGACTGCAGCAAGATGATGTGCTATATGCTGAGGAGTATCTAAAGAGTTTCTACCACCTGAAGGAAGGCAGAGGTACTCGTAGCAGACGGGAGATGCCAGCTATGGAGGCCAAGATCCGGGAGATGCAAGAGTTCTTTGGACTGGAGGTGACAGGGGGGCTGAACCCACAGACTGTGAGTGTCATGAGGAGAGCGCGCTGTGGGGTGTCCGACGCCGAGAACTACAGCTTCTACCCAGAAAAATCCAAATGGAAGAACCACACCATTACATACAGGGTTGTGAAATACACCTCAGATCTTAAGAAGGAAGATGTGGACAAGTCTTTCCAATGGGCCCTAAAGATCTGGAGTGATGTGGCTCCACTAAAATTTGTGAAAGTCGATCAGGGAGAGGCTGACATGATGATCACCTTCGGATCAAAAGCTCACGGGGATTTTTTTCCCTTCGATGGACCCAAAGGAGTGCTGGCTCATGCCTTTGAACCCAGTGAAGGCATTGGAGGGGATACGCACTTTGACGATGATGAAATATGGTCAATGGGAAATAAAAAGCCagGCTACAACTTGTTCACAGTGGCGGCTCATGAGTTTGGTCACGCCCTGGGACTCTCCCATTCCAAAGACCCCTCTGCTCTGATGTACCCAAACTACAAGTACTACAACGTATCCACATACACCCTGTCCAGGGATGACCGCCTGGGCATACAAGAGCTATATGGCACTACCAGCGGCCGCACACAGGAAGTGCTGACTGTTCCCGAGAAGTGTGACCCCAACCTCTCCTTCGATGCCGTTGCTGCCATCGGAcgagaaatatatttttttaaaaacagGTGTAGGTACATGCATCGTCTGTGTGTCTCATCCCTACCCATTGTGTGCCCCTCACTGTGCAGTTATATGTGGATACGCACGACGTGGTGGAGGTTCTGGAGCAAGATTAGGGAAGGCTCCATCACTACTTTCATACCAAGCATCAGTTCTCCCATTGACGCTGCTTATGACATCCCTGCCAAAGGAGTGGCATATATTTTTACTGGTCCAAAATATTGGCTTGTTCAGCAGTTAAATATGAAAAGCTACTCCAGTTCCATCTATAACTTCGGATTTCCATCATCAGTAAAGAAAGTAGACGCAGCTGTCCATGTCAAAGACCTTGGAAAAACCTATTTCTTTGTAGGCGACGTGTATTACAGGTATGATGAAGCCAGGAGTAAAATGGATCCTGGATTCCCAAGGAAAATAAGAAGTGACTGGCCTGGGATTGGTAGCAAAATTGACTCAGCCTTCGAACTGGCAGGCTACATTCACTTCTTCTCTGGATCCAAAGCTTACAAGTACAGCTACAGGCACAAACGTTTGTTGAACTCTGTCAAGGTGAACTCATGGCTGGGATGCTAG

Function

GO: NA

KEGG:

id description
K07999 MMP20; matrix metalloproteinase-20 (enamelysin)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14937 lncRNA downstream 180892 12638493 ~ 12638698 (-) True G12096
TU14892 lncRNA downstream 428182 12387798 ~ 12391408 (-) True G12058
TU14871 lncRNA downstream 464226 12354675 ~ 12355364 (-) True G12046
TU14864 lncRNA downstream 466209 12353160 ~ 12353381 (-) True G12041
TU14816 lncRNA downstream 580576 12238785 ~ 12239014 (-) True G11996
TU15107 lncRNA upstream 255311 13097991 ~ 13100224 (-) True G12235
TU15219 lncRNA upstream 700668 13543348 ~ 13545718 (-) False AMCG00016246
TU15249 lncRNA upstream 784575 13627255 ~ 13639150 (-) True G12359
TU15247 lncRNA upstream 795623 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA upstream 795623 13638303 ~ 13639590 (-) False G12358
AMCG00016225 mRNA downstream 13706 12793808 ~ 12805884 (-) True AMCG00016225
AMCG00016228 mRNA downstream 27393 12786258 ~ 12792197 (-) True AMCG00016228
AMCG00016224 mRNA downstream 41664 12747929 ~ 12777926 (-) True AMCG00016224
AMCG00016223 mRNA downstream 75810 12738751 ~ 12743780 (-) True AMCG00016223
AMCG00016227 mRNA downstream 85560 12728114 ~ 12734030 (-) True AMCG00016227
AMCG00016226 mRNA upstream 7198 12849878 ~ 12868822 (-) True AMCG00016226
AMCG00016236 mRNA upstream 48298 12890978 ~ 12898310 (-) True AMCG00016236
AMCG00016232 mRNA upstream 64227 12906907 ~ 12932297 (-) True AMCG00016232
AMCG00016235 mRNA upstream 97442 12940122 ~ 12949580 (-) True AMCG00016235
AMCG00016233 mRNA upstream 135596 12978276 ~ 12983296 (-) True AMCG00016233
TU14856 other downstream 490557 12323161 ~ 12329033 (-) True AMCG00016211
TU14520 other downstream 1971779 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 1971779 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 4625158 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 8899166 3907759 ~ 3920424 (-) False AMCG00016049
TU15028 other upstream 19419 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 19419 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 27160 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 711905 13554585 ~ 13559184 (-) False AMCG00016246
TU15638 other upstream 1947523 14790203 ~ 14791969 (-) False AMCG00016293

Expression Profile