RNA id: AMCG00016223


Basic Information

Item Value
RNA id AMCG00016223
length 1170
RNA type mRNA
GC content 0.51
exon number 9
gene id AMCG00016223
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12738751 ~ 12743780 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgctgcagctgtgtgtCCTGTGGCGGTGAACGGGTGTGTGTCAGTTCCTCGCAGTGGTGCGACAGTGTGCAGGACTGTGTGGGGGGAGAGGATGAGTCCAATTGCTTTCGGCTTTATGGTTCCAGGTTTGTCCTGCAGGCCTATTCATCCAAAAGCCGGTCATGGAAAGCTGTCTGCTCCGACGGCTGGAACACGAGCCTTGGAAAAACTGCTTGTGAACAGATAGGATATAGCAGTGATACTTATTTCAAATCGGAATATGTGAACCAGAATGCTGGTGGCTCTGTTGGATACATGAAGCTAAACCCTGATTTGAGCTCCTCTGGGAAGGCTCTGCATAAGCAGTTGTCCAGCAGCGACTCTTGCTCAACGAATTCAGTTGTCACACTGCGTTGCATTGACTGTGGGACCAGGGCTGCCCCGTCCACACGCATTGTTGGTGGGACACAAGCTACCCTGGGCCAGTGGCCGTGGCAGGTCAGCCTTCACGTTGAAAGCCGGCATCTCTGTGGTGGGTCCATCATCACCCCCTACTGGATTGTGACGGCAGCGCACTGTGTGGAAAAGTTTTCTGACCCTGGATTGTGGACTGTTTATGCAGGACAGCTCACCCAGACAGAAATGAGTTGGCGCTCTGGATACTCTGTGTCCCGTATCATCGCGAACAActacaacagaaacacaaagaataACGACATCGCTCTAATGAAGCTGAGTACCCCACTTATATTCTCAAGAACAGTGAGTCCAGTGTGTTTGCCTAACGTTGGTCTCAGTATCGACCCGCCTCGGTCTTGCTGGATATCTGGCTGGGGAGCGACTCAACAAGGAGGTACAAGAATAGCTGTAGCCTCAGTGGCCTTGTTATATGTCACTGgataCTCTTCTGATATATTGATGCAAGCACCGGTCTCACTAATAGACAGGGTCACCTGTAATGCACCCAGGGTGTACTCTGGGCAGATAACAAACACCATGATCTGTGCCGGCTATCTACAAGGGGGAATCGACTCCTGTCAGGGAGATAGTGGAGGACCTTTAGTCACTGAAGAGAGCTCGCTCTGGTGGCTGGTGGGAGACACTAGCTGGGGTGATGGCTGTGCTATGAGGAACAAACCCGGAGTGTATGGCAATATGACTGTGTTCCTGGACTGGATCTATCAACAGATG

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K09633 TMPRSS2; transmembrane protease serine 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14937 lncRNA downstream 100053 12638493 ~ 12638698 (-) True G12096
TU14892 lncRNA downstream 347343 12387798 ~ 12391408 (-) True G12058
TU14871 lncRNA downstream 383387 12354675 ~ 12355364 (-) True G12046
TU14864 lncRNA downstream 385370 12353160 ~ 12353381 (-) True G12041
TU14816 lncRNA downstream 499737 12238785 ~ 12239014 (-) True G11996
TU15107 lncRNA upstream 354211 13097991 ~ 13100224 (-) True G12235
TU15219 lncRNA upstream 799568 13543348 ~ 13545718 (-) False AMCG00016246
TU15249 lncRNA upstream 883475 13627255 ~ 13639150 (-) True G12359
TU15247 lncRNA upstream 894523 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA upstream 894523 13638303 ~ 13639590 (-) False G12358
AMCG00016227 mRNA downstream 4721 12728114 ~ 12734030 (-) True AMCG00016227
AMCG00016219 mRNA downstream 131550 12602884 ~ 12607201 (-) True AMCG00016219
AMCG00016216 mRNA downstream 207706 12514358 ~ 12531045 (-) True AMCG00016216
AMCG00016217 mRNA downstream 239750 12473263 ~ 12499001 (-) True AMCG00016217
AMCG00016212 mRNA downstream 362223 12360575 ~ 12376528 (-) True AMCG00016212
AMCG00016224 mRNA upstream 4149 12747929 ~ 12777926 (-) True AMCG00016224
AMCG00016228 mRNA upstream 42478 12786258 ~ 12792197 (-) True AMCG00016228
AMCG00016225 mRNA upstream 50028 12793808 ~ 12805884 (-) True AMCG00016225
AMCG00016222 mRNA upstream 75810 12819590 ~ 12842680 (-) True AMCG00016222
AMCG00016226 mRNA upstream 106098 12849878 ~ 12868822 (-) True AMCG00016226
TU14856 other downstream 409718 12323161 ~ 12329033 (-) True AMCG00016211
TU14520 other downstream 1890940 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 1890940 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 4544319 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 8818327 3907759 ~ 3920424 (-) False AMCG00016049
TU15028 other upstream 118319 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 118319 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 126060 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 810805 13554585 ~ 13559184 (-) False AMCG00016246
TU15638 other upstream 2046423 14790203 ~ 14791969 (-) False AMCG00016293

Expression Profile