RNA id: AMCG00016225


Basic Information

Item Value
RNA id AMCG00016225
length 2256
RNA type mRNA
GC content 0.48
exon number 16
gene id AMCG00016225
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12793808 ~ 12805884 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATGGAGACTTTTATCCCTTTGATGGACCCAGTGGAACGCTAGCTCATGCCTTCTCTCCTGGAAGTGATATTGGAGGGGATGCTCACTTTGATGAAGATGAAAGTTGGACAACGACATCGAAAAATTTCAATTTGTTCCTCGTTGCTGCCCATGAATTCGGACACGCTATGGGGCTCGACCACTCCAATGATCCCACCGCTCTGATGTATCCCACATACCAGTATGTCAACACAGACGGATACACGCTTCCCGCTGATGACGTCAAAGGAATCCAGTCTATATATGGAAAACCTGTCAACTCTCCAGCGACTACAGCCAAGCCATCAGTGGGAACATCCCCCAAGAATACTCCAACTTCCAGGCCTGGCAGCTGTGACACAGATTTGACCTTGGATGCTGTGGCTTTTTATAATAGTGACCTGCTTTTCTTCAAGGGCAGTGACATTTGGCGTAAAAAGAGAGATGGGACAGTAACCAAGGAGTCCATCAAAGCTAGCTTGCCCGGCCGGCCAACAGATGTTGATGCTGCTTATGACTTTGGTGGAGTCACCTTTGTCATAAAAAatacaaatgtatataatagcATCCCTTTTGCGAGAAAACTATTACGGCTCAGCATTTATTCAATGGGATTTCCACGAAATGTGACAAAAATTGACGCAGCCGTCCACATTgcacagacaggaaggacactGTTCTTTGTGGGGGATACATACTACAGcttCAATCCACTTAAGTGGAGACTTGAGCCCAGTCAGTACATTCAAGATGCCTTCCCAGGAATAGAACCAAAGATTGATGCTGCCTTTCAAATAGCAGGAAAGACCTACTTCTCCAATGGACCCTTCCTGATTCTCAACTACACACCACTTATCCATAAGAGACTGGTTGATATCACAGTCAAGCTGGCTTTCAGGCTGTGGAGCAGAGTAACTCCTCTGAAATTCGTTCCCATTCGCCGAGGGGAAGCAGACATCATGATTAAATTTGCCTCTTGGAGTCATGGTGACGGCTCTCCTTTTGACGGGCCTGGCGGAGAACTCGCACACGCCTTCGCCCCTGGCAGCGGCATACTAGGGGATGCCCACTTTGACAACGACGAAAAGTGGACGCTTGGGCAGAATGGTAAGATTGAATATCTCTCCCGGTTCTTTGTGGATGGGAGAAAGAGTCCACCTGTAGGCAGAAGTAGGGTCTCTGTGAAGCCCTTTAAGACAACCCTAGAGCTGATGCAAGAGTTCTTCGGACTGGAGGTCACTGGACAACTAGATAGCAACACACTGGAGGTGATGAACAAACCCCGATGTGGAGTTCCTGATATCAGCAGATACAGCCACTTTCAAGGGAAGTTAAAGTGGGAGAAAACTCCTATTACTTACAGTACTTGCTTCAATGTGCTTCCAGGGGTGAACCTGCTCCTAGTGGCGGCCCATGAGTTTGGCCACGCGCTGGGACTGGACCACTCCAGGGACCGCAGTGCTCTGATGTACCCGACCTACCAGTATGTGGACACCAGAGGGTACCAGCTTCCAAAAGATGACAGGCTTGGCGTCCAAGCTTTATATGGTTCGCGGACTTCAACTAACAAGCCTGATCCTAAACCACAGCCAGAACCACAACCAGAACCGCGacccaaacccaaacccaaacccaaTCCTGACCCCGTGCCCAGGCCTCCAGAACAATGTGACCGCAACCTGGCATTTGACGCTGCTACTTCAATGGGAAATGAGCTTTATTTCTTCAAAGACAGGCGAGTGAAGCTGTTCTTCTGGACAAAGAGCCTATCTGCCATTAAGTTAATGTCTATAACGTCCATCTGGCCTCAGATCAGTTCTGTAGATGCTGCATATGATATCCCAGAAAGCAGAACtgcatattttttcaaagGTGATCGTTACTGGGCGGTCAGTGGGCACAAGACGCTGCAGAACTACCCCAGGCGGATATCTGAGTTTGGATTCCCTCGATCAGTAATGAAAATCGACTCTGCAGTGCACATCAAGGAGAGCAGGAGAACACTGTTCTTTGTGGGAGACAAATACTGGATGTTCAATGAGACAAGGAAGAAAATGGACCGAAGGCGTCCCAGAAACATCCGGACAGATTTCCCAGGAATTGGTTCCAAAGTTGATGCTGCCTTTGAGAACTATGGTTACCTGTACTTCTCAGATGGGCCCAGACAGACCAAGTATAACTACCAGACAAGAACAGTGTCTCGGGTTTTGCTAAACTACAGATGGCTGGATTGCTAC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14937 lncRNA downstream 155110 12638493 ~ 12638698 (-) True G12096
TU14892 lncRNA downstream 402400 12387798 ~ 12391408 (-) True G12058
TU14871 lncRNA downstream 438444 12354675 ~ 12355364 (-) True G12046
TU14864 lncRNA downstream 440427 12353160 ~ 12353381 (-) True G12041
TU14816 lncRNA downstream 554794 12238785 ~ 12239014 (-) True G11996
TU15107 lncRNA upstream 292107 13097991 ~ 13100224 (-) True G12235
TU15219 lncRNA upstream 737464 13543348 ~ 13545718 (-) False AMCG00016246
TU15249 lncRNA upstream 821371 13627255 ~ 13639150 (-) True G12359
TU15247 lncRNA upstream 832419 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA upstream 832419 13638303 ~ 13639590 (-) False G12358
AMCG00016228 mRNA downstream 1611 12786258 ~ 12792197 (-) True AMCG00016228
AMCG00016224 mRNA downstream 15882 12747929 ~ 12777926 (-) True AMCG00016224
AMCG00016223 mRNA downstream 50028 12738751 ~ 12743780 (-) True AMCG00016223
AMCG00016227 mRNA downstream 59778 12728114 ~ 12734030 (-) True AMCG00016227
AMCG00016219 mRNA downstream 186607 12602884 ~ 12607201 (-) True AMCG00016219
AMCG00016222 mRNA upstream 13706 12819590 ~ 12842680 (-) True AMCG00016222
AMCG00016226 mRNA upstream 43994 12849878 ~ 12868822 (-) True AMCG00016226
AMCG00016236 mRNA upstream 85094 12890978 ~ 12898310 (-) True AMCG00016236
AMCG00016232 mRNA upstream 101023 12906907 ~ 12932297 (-) True AMCG00016232
AMCG00016235 mRNA upstream 134238 12940122 ~ 12949580 (-) True AMCG00016235
TU14856 other downstream 464775 12323161 ~ 12329033 (-) True AMCG00016211
TU14520 other downstream 1945997 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 1945997 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 4599376 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 8873384 3907759 ~ 3920424 (-) False AMCG00016049
TU15028 other upstream 56215 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 56215 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 63956 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 748701 13554585 ~ 13559184 (-) False AMCG00016246
TU15638 other upstream 1984319 14790203 ~ 14791969 (-) False AMCG00016293

Expression Profile