RNA id: AMCG00016232


Basic Information

Item Value
RNA id AMCG00016232
length 5406
RNA type mRNA
GC content 0.38
exon number 11
gene id AMCG00016232
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12906907 ~ 12932297 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGACGCGCTCGCAGTGCCCGGCTGTGTTCATCATGGCTCCCGCGGCAGACAGGCCCGGCTACTGGGGCCGCCCGACCTCCACCCTGGACTGGTGTGAGGACAACTACGCCGTGTCCTTCCACATCGCGGAGTTCTGTGAGTACACCCGGCCGGGGGACGTGGGCTCGAAAAAAGCCGGCAAATCGGCGCACGAAAAAGGGGAAACTACGCGCACGGATGCACCGGGAATACTGTGAGTAACCTGATCATGATCCTACCTCCGATCTATGGTGCCATACAGACGATAAAGGACGGACTTGAAATCCGTTATGTTTTTGCATATTTGGGACTCACagCGGTTGGTATTGGCTCTTGGTGCTTCCACATGACACTGCAATACAAGATGCAGTTACTGGATGAATTGCCAatgatctacagctgctgtGTCTTTGTCTACTGCCTATATGAATGTTTCAAGCCGAAGAACTCAATAAATTATTTCCCCATTGTGGTCTTGCTGCTCTTCAGTGTCTCCGTAACAGTGGTATATTTACAATGGAAGGAGCCAATATTCCACCAGGTCATGTATGGAACTCTGGTAGCTTGTTTAGTTCTGCGATCAGTATTCATTGTCACGTGGGTGTACCCTTGGCTGAGACCACTTTCCTACACATCTCTAACTGTGTTTATGATGGGATTTTTGCTTTGGAATATAGACAATATATTCTGTGATACCTTAAGGGAAGCACGACAGAAGCTGCCCCCTGTTGTTGGCGCCGTTACACAATTTCACGCATGGTGGCACATCCTGACAGGCCTGGGATCCTACCTTCACATTCTTTTCAGCCTCCATACAAGAACTACCTACCTCAAACACAGACCAAAAGTAAAgTTTATATGTGGCGTCTGGCCGGTGATCCGAGTTGAGCCTCCCAAGAAAAACTGAGGAAGGGaagagccgagccgagccgagatGTTCACACGCTGTGCAGCGAGGCCTTCAGGAGGCGGTCCAGCTTGACCAGGGTCACGGCCTGATGGCGGCAGCCCAGGAGTCTCCCCATCTCATAGAAGGGATACTTGAATTTCCATGTATGACATAAAGTTATAGATTTGCCAAGTGTAGTATTTAGTGTAGATAGCAGGGGAatgatatggctttttcttttttttacgtTGGATCATATTTCTGATCTTGTGGTGAAATTATTTGGTGGAAATTtagatatttgtattaaacagtATGTGTATATTATGGCTGCAATTTACAGTATAAGGTAGGAATAGCTGTGTAATTAAGAGCGAATTGTGGCTCTTAAGGGTCCtaaatgaaaaattatataaaaattagTGACAATATAACGATGATAAGAAACAGTGCTCTCATTTGCTGTTATTACGAATTGGTGCACCAGACTTAGAATTAGTGTTCAGACCTAGATATGTGGAACTCTAATTCTGGAGTAGGGATTAAAAGTGGTTACACAGCTCTTCACGTCCAGTCATTGTAAGCAATGCCATGATATTTTTGATGGAcaaaaagattatttttgtgCTGGCCACAAAACAGCAGGTATGATTTACTGAAGTGGTCTTCACTTCATTTTCAAGGGATGAGCAGTGTTTGCTGGTTGACGTTATCGAACAATGGCCATGTAGGCAAATGCTATATCATCTCAAATTACGGGGGGGCCAAAAGCTAGGCTATATAACTGAAAACTGGAAACCTGTGTTAATCTGCATCGCACAGGTTTTCAGTTTGTGCTCATTTTCATAGTTTTCGTGGCTCAGCCTCAAGCTGTAGGATAACAAAGATCTCCGAATTCACTAACTGATGTTCGGGTGTTGTCTGAAGATAAGACTACATTTAGCAGCCGGACTCATTTCTGTACAATTACGGAACTAGACTGGAATATTTCTACTGAAATCCAGCGATTTTGCTTCTTATCGTCTTTCTTCCTTATGAGTCAAGCAATGGTTCTGAAGCAATTattctctatatataaatatatagttagtGATATTGATATTAACCGTTAAGATATATTGAGACCTTTTTGTCTATGCAAAGTCACTAgccaaaaattatattttaaaaggcagtaCAGAAACTGGaagacattttgtatttgtatattttattttaagttaatttagcaTGTTAAATTGTCCACCAGGGACTAGAAACTAGTCAGTAGCCCCGGATGAGTCTTGCTTAACACCTGAATATTGTTGCCTTACTTTCTACCTAGGGGGTTGGGGATTGTATGTAATTTGAAATTTTACAATGCCACTTTAACCTTTAAACTGCATATTTTCAGATGATTTACTACTGTATTCTACATGtcaatttaatgtatataatttaatttattctgcatgCGGTGTTTGTGAAAGCCTGTTACAGAAACCACTCACCTCTGGCTTTTGTCCTGAGAATTGCGCTGCATTTGTGTTCCTAATTTTTTTAAGCTCTAGATGTAATCGACTAGAAgcaagattattttaaattatattttcaatgagtactatatttaattttctaacaGATAGAGGTATTCTTATTCACTTCTTTACCGACTgatcagttttttctttttgattactttttttgtgaccataaaataattttcacatacagcattcaaaaacaattttgaGTATTTTATGTGTGTAAGAAACCCATTTCACTGAGAAGTGGATATGAACCCAGGCTTTTTCAGGGTGTACCCTTGGCAGAGAACACCTGTTGTAAAGGTGTCAAATTTCTCAGAACAGGCCAGGCAAGGGTTTTGTTGTACTTCACTACAGTATAGTTTCATTCACTGTGTTTCAATTGAAGACATGAAGTTTgtctttttcacatttgtaaaacatttcatcAGTATTTGGACAAAGGCTATGATCtaaatgtttttccaattttaattaactcttattctctttgtgtttctgtaatatGCCGATGACTGTCTATCTTTCTGGCTTGTGAATATAACCATTCAAAGACAACGTCACATGATAGCGCTTCTATACTTTGTTAATGTGTCTGCAATTCATTGAAGATGCTATAAATGTGAATTtctaaatgaaaaggaaaactacTGAAAATTATTATGGAAGTCTACCACTGCACAACTggaagatgcatttaaaaagtggtCTATCTGTGGGGCATGGACTCAGACAGAAAATCGGTTTTCATTggtatatattcaaattaaaatatcactGAAAGATCAGGTGAATGCTTTTGTATCAATCTCTTTGTGTTCTGAGGTTTATAATAActtagtattgttatttttcaaaagctgcTAACAGCTtgtgtgtttgaaattaaatcttTGTTCCTTCTCTACATGGTCTGAAATGTAGAGAAGGTGATTTCTTGCTGGTAGTTGTGCTATATATAGGCCATAGAGGTGAAGGATGCCTAGAAAATACTTATTTGAGCTTatgcttaaaataacattgaaagGATTAGCTACTGGAATGGAGTAAACTGGAAGAGTCACTTATTTCTTAAGTTACAAGGATAACAGAGCAAACAATCACCTGAGGAATGTACAGCCTGTCATCACATTTCAGAATAGCTTCAGGTGTTGTCAAACTGAAAATTTGAATAATCTAGGCAACAATGACGAcactctctttttctttttgtatcttttatttttccacccCAGCTCTGTATGTATGTGAAGCACAATTTTAAGAACTAATACCAGTCTACTACACCATTGACAGCAATGTACCCTCCTTAACCTGATATTAATTTAGGTTGTACACTGAACAAAACTGCGAAACAGATGCTGTTAGTGAGGAACAAAGATGCATTGCACTCCTGTTAAGTGTGCCTTAGTTTTAAACTGGAAGTGTGATCCATGTTGCCTTGAAGTCccttctgtaacatttttataatgaatgGTACCAACATATGGTTCGGTTAAATGTTACTTGGGTAACGGCATCAATAAATATGCCTGGAAACTTACCAATTCAGTACGTGCTGTTTTATCTGCAGTAGTTAGTAAGGATTGGTAAGTAACTAAGGCCAAGCATTCAGTAACATCCTGTTGAGTAATGTTGAAATAAGAGGAAGCAGAAATCCTGTCATCCCGCTCCTCTCATTAGCTTTGAACCTGAACCTTGGCTGTTGATCCTTCCCAAGCAACTTTTACCTAAACCCAtattaaaagcattacaatggagttttctgttctttccctttctctttcgTTACAAGTATTTCTAATTAACAAGAACACTAATGTGAAATATACCATGATTTGGTAGCATTGTAATTCAATTTTGTGGACTGATTCTTATTACTTTAAATCTTTCAACCTCCTCACATTGTTTCTAGCCACCAACATAGTATTCTGAAAACACTGGGAGCTCTAGCTTAACATGCTGAAATGAACGGAGACTTCTGTTCATGCTAATGCACTGATCTGTATTGTTCTGTACAGTCATGTACATTTTGTGAAGACATGTTTTGTTAGACTTATCTGCTGTCTATTATGTGACCAAATTTGTATGTACTAACCTTGTATTACATTTGTACTATGTAGATTTAATTTAAGGGGTGTGTGATAAAGGCTTCTATTGTATTTGGATGTTGTTCTTTGTCATGTCATGTTTTGCTTCAGTTCTTTTACACtcattgttttccatcttgCATCCCATCCCCAGTTTCTATgtctttgcttttttaaatacaaactttgttgtttttctagcCCCATACATAGAATAGTTTATACTGTACCAATTGgtctttaaacaaaaatggcaCTTATGGAGGTGAACTGAAGTTTGGtgcaaaaactaacaaaaacatgGAGAGTTTGGTCAAATGTACATGCATTATTTTGAGAACACATTCTacttttggttgtgttttttattgaatgtttcTCTGCTTGTCTGTtgctttcaaaaatgaataaatcattgCTTACACTTTAGAGTAGACCAGATTTGGAAATAACCATGATGAAATGATTAGCTTAAGGAGACAAATCAGAACAATACTGTCCTCTAGTGGTACTAGTTAACTTAAGGTTAAGCATTCACTGGCTGTATGGGAATAGATCGCATTTAGTTTTGTAATAGATAAGGTTAGAAGCCAGACATTCCTTTGAAATTCCTAAACACCTTTATTCTCGAAATGTATATGAAATTGTAACAGCTGCTCTTATAGAGATAATTACCAGTCTGTTCTTGTGATCTATATTCGGTCTGTTTACCCATGGCTTTATAGATGCAGTATTAATAGAAAGGGGCTTTATCATCAAAGGCTACAGAAGCAATGCCATGGCATAGACTGGTCTCTGTGGTGGCTTTTCGCCGAAGTCCCACCGATAGTCTGTGCTACCGGAAAATGACACGCATGCATGAGAGTTATCAGACTGTTA

Function

GO: NA

KEGG:

id description
K04711 ACER3, YDC1; dihydroceramidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14937 lncRNA downstream 268209 12638493 ~ 12638698 (-) True G12096
TU14892 lncRNA downstream 515499 12387798 ~ 12391408 (-) True G12058
TU14871 lncRNA downstream 551543 12354675 ~ 12355364 (-) True G12046
TU14864 lncRNA downstream 553526 12353160 ~ 12353381 (-) True G12041
TU14816 lncRNA downstream 667893 12238785 ~ 12239014 (-) True G11996
TU15107 lncRNA upstream 165694 13097991 ~ 13100224 (-) True G12235
TU15219 lncRNA upstream 611051 13543348 ~ 13545718 (-) False AMCG00016246
TU15249 lncRNA upstream 694958 13627255 ~ 13639150 (-) True G12359
TU15247 lncRNA upstream 706006 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA upstream 706006 13638303 ~ 13639590 (-) False G12358
AMCG00016236 mRNA downstream 8597 12890978 ~ 12898310 (-) True AMCG00016236
AMCG00016226 mRNA downstream 38085 12849878 ~ 12868822 (-) True AMCG00016226
AMCG00016222 mRNA downstream 64227 12819590 ~ 12842680 (-) True AMCG00016222
AMCG00016225 mRNA downstream 101023 12793808 ~ 12805884 (-) True AMCG00016225
AMCG00016228 mRNA downstream 114710 12786258 ~ 12792197 (-) True AMCG00016228
AMCG00016235 mRNA upstream 7825 12940122 ~ 12949580 (-) True AMCG00016235
AMCG00016233 mRNA upstream 45979 12978276 ~ 12983296 (-) True AMCG00016233
AMCG00016234 mRNA upstream 128444 13060741 ~ 13062765 (-) True AMCG00016234
AMCG00016238 mRNA upstream 132919 13065216 ~ 13071642 (-) True AMCG00016238
AMCG00016243 mRNA upstream 535061 13467358 ~ 13477045 (-) True AMCG00016243
TU15028 other downstream 36347 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 36347 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 44037 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 577874 12323161 ~ 12329033 (-) True AMCG00016211
TU14519 other downstream 2059096 10846931 ~ 10847811 (-) False AMCG00016176
TU15220 other upstream 622288 13554585 ~ 13559184 (-) False AMCG00016246
TU15638 other upstream 1857906 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 3926244 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 3926244 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 3926244 16858541 ~ 16861179 (-) False G12945

Expression Profile