RNA id: AMCG00016235


Basic Information

Item Value
RNA id AMCG00016235
length 2724
RNA type mRNA
GC content 0.40
exon number 2
gene id AMCG00016235
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12940122 ~ 12949580 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAGAAGAGCGACCACTGAGCTATAAAAgAGGAGAGATGGCCTACATCCTGTGGATCAGCATGAATctgcttttcagtttttacGTGGGAGCGGTGAAGAACTGCTATCCAGGGTGCCGCTGCGAGGTGGAGAGCTTCGGCCTGTTCGACAGCTTCAGCCTGACTAAGGTGTACTGCAGTGGAGTGGGACCCAATGTGGCACCAATTCCTATCCCTCTCGACACCTCCTATCTAGACCTGTCTTCTAACTCCTTGCACAACATTGCGGACTCCATGCTGTCAGGACCTGGCTACACCACGCTTGTCAGCCTGGATCTGAGCAACAACCACCTCTCCAAGGTCAACAGAAACACCTTCTCCAGACTGCGGTACCTGGAGACTTTAGACTTGAGCCACAACTCTCTGGAGGACCTTGCTGACGAGTGCTTCTCCGGTCTCCCACTGGCTGAAGTGGATCTGAGTTCTAATCGGATCCAAGAGATCAGCCTGGACATCTTCAAATCCAAGGGCCATGGGAAGCCTGTCAATGTGGACCTTTCCAACAACTTATTGACTAGAGTGTTGAGGAGGCCGCAGATGAGTCCTCTCAACATACAGAGCATGAACCTGTCGGGGAACCACCTGAAAGACGTGCCCAATCTTCAGGGTGTTCTTTTGCGATACCTGAACCTTGATGGGAATCGAATTGTCCAGATAGACAGGGGTGCCTTTGCAGGGCTGAAGGACCTTCTCTACTTGTCCCTTAGTGGTCTTCCGGACCTGTCTGTTATCCAGCCTCACAGTTTCCGTGGTCTTGAGAACTTGCAAGTTCTTGACATGTCCAAGAACCCAAAATTAAAATTGCTGAATTCAGAGGTGTTCAGCGGCCTTCTTTCTTTACAGGAGCTCAATCTGTCCAACTCTGGTGTGACTTTCTTACCAGATAACATGTTGAACCACTTGCCAAGCATCAGAAGCATTACTCTGAGAAATGATGTCCGTTGCTGGAAGAACCAAAAGCAAGCATGGTTTCATCAGCAGATCGGACAAGTGAAGAGTGGCGAATTCCTGATATGTGATGTAGCTGGCATAGTTTTATGAAGTAGTTACTTCAGACTGtcctgcaacacaaacaaatattaaagcctgaaatgtgccttttttaattctgaagaaaaacaatttaaactttgtttttattcctgcCAAAACTTgattttgtgatatttttgtaatttaaggaaagaaactgaacacattgcatttgtattattcctTTGAAAAATCCATAAGTGCAAGTAGTGTGATTACACTATTTTCATGACAAATTCTAACCTTttattttggtacaaattgtCATATTTGTTAAGGGGACTAGAAGGCCACAAAAAACCTAAATATTGATGTTTATGGAATAAGAGTGATTACACTTTTCATTGCAGTTTTTCCCTCCGTGGCATTAGAAGACTGCTGGAAATGGCAAAGCTCTTCAGATGTAACCATTCAGGTCAGGGAAAGTTTTCAGAAGTTTGGACCAAAGTGATAAAGATAATTAATACAGTATAGAAATGGACATGTCAGTTTGTTTGTAAACCAGATACCTCTTGACCTACAAATGGATGGTACACGTGACATAGTCTTTCCCTAGCCTGGTTAGAAACTGAACACCTGAAAGTCTGTATTGAAGTACTAAACCTTGCTAATATGAACACTATGCTGGGGCTCTGATCAGCTCTTCCCAAGAAAGGGAGCTAAAGTGCCTTAAGTGTAATTGTAGCAACGTGCAAAGATTCAGTTTACATCTTTATGTAAATATGTGGAGATTGTAATAATTGATCAAATGGAAATGAatataacatgaaaaacaacaataaaaaggtCAACAGAATGCTAAAATACACTGCACAATAGGAATTTTCTTTTTGTCTAACTTTTACAAGATTATACTTAAGTCTTCTGTTCGTCATCTATGTGATTAAGTAAAATGGGAGGTTGAAGTTCCTTTGAGATACCGCTTCGACCTCTGCAAGATCTgttaaaccttttttaaatcattctgaATTTGCTTGAAAGGATTTTGCCCACACGTGTTCTTTATTACTATGACCTGCATTTCatatggttttaaattattaaagtgTGTTCACAGTTCTTTTAAGTTGCCTGCAGAGATATTCACAGTTCAGACAATGTTAAATTGGGCTGTGGGTATCATTACTTATGTAAATTACCTTTTATTCCCTGATCCCATTATCAGTTTTGCTGATCTATACATGTGTACGAGCGAATTTTTGGGAAAGTGTTCACAGAATTAGCTTTTAATCGTTGATCGAAAATTAACATTTACTAATCACTGTGTCTTTGTAAAGACCAATTTGGGATCTAACCAACTTGCTGTGTATTGCTTGCGTCCTCTTCATGTTATGAATCGCAGTTTGCAGCCCCCTCCATGTTCATAGtgaagatacacacacatacccttttatttttctgcgGGCAGAAAATGACAATGTAAGTTTTGTAATAAATGATCTTTAAGTACAtccataatattaaatatttatattttagtaatgGTGGTATTATAAACAAATTTGGAGTGACAATCGGCTTCATGACTGCAATTTAAGGGATTTTCATTGAAGAATCTCACAGCCTAAGGAGCAGGTTTTGTATGTTGATGGCaacaatatatgtaattatgtatataacactaaaataaatctaaaaccatAATGAGAA

Function

GO: NA

KEGG:

id description
K08130 TSKU; tsukushi

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14937 lncRNA downstream 301424 12638493 ~ 12638698 (-) True G12096
TU14892 lncRNA downstream 548714 12387798 ~ 12391408 (-) True G12058
TU14871 lncRNA downstream 584758 12354675 ~ 12355364 (-) True G12046
TU14864 lncRNA downstream 586741 12353160 ~ 12353381 (-) True G12041
TU14816 lncRNA downstream 701108 12238785 ~ 12239014 (-) True G11996
TU15107 lncRNA upstream 148411 13097991 ~ 13100224 (-) True G12235
TU15219 lncRNA upstream 593768 13543348 ~ 13545718 (-) False AMCG00016246
TU15249 lncRNA upstream 677675 13627255 ~ 13639150 (-) True G12359
TU15247 lncRNA upstream 688723 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA upstream 688723 13638303 ~ 13639590 (-) False G12358
AMCG00016232 mRNA downstream 7825 12906907 ~ 12932297 (-) True AMCG00016232
AMCG00016236 mRNA downstream 41812 12890978 ~ 12898310 (-) True AMCG00016236
AMCG00016226 mRNA downstream 71300 12849878 ~ 12868822 (-) True AMCG00016226
AMCG00016222 mRNA downstream 97442 12819590 ~ 12842680 (-) True AMCG00016222
AMCG00016225 mRNA downstream 134238 12793808 ~ 12805884 (-) True AMCG00016225
AMCG00016233 mRNA upstream 28696 12978276 ~ 12983296 (-) True AMCG00016233
AMCG00016234 mRNA upstream 111161 13060741 ~ 13062765 (-) True AMCG00016234
AMCG00016238 mRNA upstream 115636 13065216 ~ 13071642 (-) True AMCG00016238
AMCG00016243 mRNA upstream 517778 13467358 ~ 13477045 (-) True AMCG00016243
AMCG00016248 mRNA upstream 534757 13484337 ~ 13494574 (-) True AMCG00016248
TU15028 other downstream 69562 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 69562 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 77252 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 611089 12323161 ~ 12329033 (-) True AMCG00016211
TU14519 other downstream 2092311 10846931 ~ 10847811 (-) False AMCG00016176
TU15220 other upstream 605005 13554585 ~ 13559184 (-) False AMCG00016246
TU15638 other upstream 1840623 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 3908961 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 3908961 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 3908961 16858541 ~ 16861179 (-) False G12945

Expression Profile