RNA id: AMCG00016246


Basic Information

Item Value
RNA id AMCG00016246
length 4205
RNA type mRNA
GC content 0.55
exon number 26
gene id AMCG00016246
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13543348 ~ 13559184 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGGATCCTGTTTATTGTGTACAAGCAGCtcgtttgtgtgtttgcagatgCAGGATGGCGGAGGACACACCGGAGGAGTTTGTCTGGTGTGACGACTGTGGACAATACCATGACTCGGAGTGTCCCGAGCTGGGCCCGGTGGTGACGGTGAAGGACTCCTTTGTTCTGAGTCGAGCTCGGTCGTCTCTGCCGGACAGTCTGGAGATCAGGGAGGTCAGCGAGGGGGAGGAGGGCGTGTTTGCCCTGCGACGTCTGGTGAAGCGTACACGTTTTGGGCCCTTCGAGGCCAAGAGAGTGGCCAAGCTGGACAAAGAGCTGCTGTTTCCTCTGAAGATCTTTCAGAGGGATGGGGTGGTGGTTTGCTTTGACAGCACGAACGAAGATGACTGTAACTGGATGATGCTGGTCCGCCCGGCCACAGACTACAAACACCAGAACCTTAATGCCTATCAGCAGGACAATGAAGTCTACTTTAACACCTCTCAGGACGTGCTGCCTGGAACTGAGCTGAGGGTCTGGTATGGGGCCTTCTTCGCCAAGAAGATGGAGAAGCCAGTTCTGAAGCCACTAATCTTACCATCTACAGCAGATGTTGTAACATCTCCCATAAAGCTGATGGAGATTGAAGGGAGTGGGCTCAAGAGTGGACCTGGAGAGACCGACCTCCACATCTCTACTGACGCAGTGGTCGAGGAAAGTGAGGCCCAGGGGCCGGAGTGCAACCAGTGGGTGTGTAAAGTGTGCTCAGCAGTGTTCCTGGAGCCAAATCTTCTCACAGAGCACCTGATGAGTCACCTGCAGGAGGTAAAGGGTGTCACCCAACCCTCCAGTGACCCTCCTGTCCAGGAGGACCAGGAAATGATGCCTCCTGAACCTGTGCAGCCTCCCCAGGTTACCCCTGCCCCTTCAGAGCACAAGAAAAAGACCCGTAGAATACGTAAGCCTAAAATTCCCAAAGTCGGCCCCAGACCGCTCCCAGCACAGACTGTGAACAGAGATGCCCCCACCCCTGCGGTGCCCATCGAGCAGGTCCTCAGCGCCGTGCCTCCGGATGTGGGCTTGGCCCTCCTGCAGGCTCCGGACGTGGTGATCGGCGAGGATGGCGTGCCGGGGAAGCTGCAGAGAATGACCCGCACGCTGCTGCCCAGTGGGAAGACAGGGATACGGAAGAGATTCATGAGGCAAGGCGGGGACCACAAGAGGGTGTATCAGTGCAGCCTCTGCAACAAGGTGTTCCAGAACAGCAGCAACCTCAACCGTCACATACGTTCCCATGGTGATAAGCTCTTCAAATGTGATGAGTGTGACAAAATGTTCAGCCGCAAAGAGAGCCTGAAACAGCACATCTCCTACAAGCACAGCAAGAACGAGGTCGATGTGGAGTACAGGTACAAGTGTCCTACCTGTGAGAAGGCCTTCCGAGTGGAAAACGCTTTGAAATTCCACAACTGCCGGACAGACGACAAGACGTTCCAGTGTGAGATCTGCTCGCGCTTCTTCTCCACCAACAGCAACCTCTCCAAGCACAAGAAGAAGCACGGAGAGAAGCTCTACGCCTGTGAGATCTGCAACAAGATGTTCTACAGGAAGGACGTGATGCAGGACCACCAGCGGAGGCACATTGTGGGTCCAAAACACATGAAGCGGGAGGAGCTGGAGGCGAATGGGGAGGAGGGCACCAAGTACAGGAAGGAGCCCTCAGCCTGTCCTATCTGTGGAAAGGTATTCTCCTGCAGGAGCAACATGAACAAGCACCTGCTGACCCACGGGGATAAGAAGTACACCTGTGAGATCTGCGGCCGGAAGTTCTTCCGTGTGGACGTCCTGAGAGACCACATCCACGTGCACTTCAAGGACATTGCCCTAATGGACGAGCAGCAGCGGGAGGACTTCATCAGGAAGATTGGTATCTCGGTGGACGACAGCGACTGCAACTCTGATGAAGACGAGCTAGAGGACGACCCCGAGCTGCACAAGTACAGCTGCAAGAAGTGTCAGTGGACAGCACTTCAGACTGTCTTCAGTAGCAATGGCCTTGTGGGCTGCATCATCCACCTGACGGGGCTCATCTGTTTCTGTCCCCAGGTGACCTTCGCGAAGGGCAGACAGTACCTGCGGCACATCATGGAGCTACACAAGGAGAGAGGTTATGGCTGTATCATCTGCAACCGTCGCTTCGCTCTCAAGGCCACCTACAATGCTCACCTGGTCATCCACAGAGAGCAGCTGCCGGACCCAGCCGTTCAGAGGTATATTCATCCGTGTGAAATCTGTGGACGGATTTTCAACAGCATTGGCAACCTGGAGAGACACAAGATCATTCACACAGGTGTGAAGAGCCACAGCTGTGATCAGTGTGGGAAGTCATTTGCCAGGAAGGACATGCTGAAGGAACACCTCAGGGTGCACGACAACATCCGCGATTACCTGTGTGCCGAGTGTGGCAAAGGCATGAAGACCAAGCACGCGCTCCGGCACCACATGAAGCTGCACAAGGGCATCAAGGAGTACGAGTGCAAGGAGTGCAGCCGCAAATTCGCACAGAAGGTCAACATGCTGAAGCACTACAAACGCCACACTGGGATAAAGGACTTCATGTGTGAGTTGTGTGGCAAGACTTTCAGTGAGAGGAACACCATGGAGACGCACAAACTGATTCACACTGTCGGGAAGACGTGGTCATGTGCCGTGTGTGATAAGAAGTATGTGACCGAGTACATGCTGCAGAAACACGTGCAGCTCACCCATGAGAAGGTGGAGGCGCAGAGCTGCCACCTGTGTGGGACCAAGGTGTCTACAAGAGCATCCATGAACAGACACATGCGGCGCAAGCATCCTGAGGTGAAGCTGGTGGTGATGTTTAAGTGTAGGGTTGTAACGGTGAGAATCGATGAGTTGGACCAATTTCCAGATGGTACAACCATCGATGCCTCCACCATTACTATTGTACAGTCTTCGCTGGCTCAGGAGAAGGAGGAGCTCTCAGTGGAGAAACCCCCCCGGGCCTCCAAGCCAcccaaaaagaaacagaagcacGTGGAAGAGGTGGAGCTCCCTGACCCCGACGACCCCGCGTACTCAGACTTCTCCAGCAAAGGGGCGGAGTTCACTAATGCGGTGGGAGATGAGACCAGCTCCGCAGTGCAGAGCATCCAGCAGGTGGTGGTGCTGGCGGACCCCAGCGTGACGACCTCGTCCTCTCCTACCAGCACAGTGGGCCTGACCAACATCGCCGTGACGCCCATCACCACCCCCGCTGCGGCCGCCCAGTTCACCAGCCTGCAGCCCGTAGCGGTAAGCCACCTCACCCCGACCGATCGCTCGCTCACCCTGGACAACTCCATCCTCACCGTGACCTTCGACACGGTCAGCGGCTCGGCCATGCTGCACAACCGCCCCTCCGAGCTGCCTCCCGAGCCGGGGGCCTCCTCCCAGTCCATGGCGCACTTCATCAACCTCGCCACCTTCGTCAACCCCATCGCCCACCCCCTGGAGCAGCCGGCTCTCACCTGGAGGTCCGTCACGCACTCCGAGGGGAGTCCTCCCGGCCCCGCCGCTGACACCCCCCAGCCCGAGCCCCAGGACGTCCCCACGGAGCCCGCCACCCcccaggagcagcagcagcagtccgAGCAGCCGCCACAGGACCAGCAACCCCAGCAACCGGCTCAGCAACAGATGTACGGCTACTAGCCTCTGACCTGACTCTGAGGCAGATCTGTGGTCTCGAATAGCTTCTGTCCTAAATGAACTTGCGATTAGCTTGAGTTGTAAAACTGGAAAGAGAGGTTGTCAATCTTAGGCAGAAGAATGTAAGTAGTGCTCATTCCGTGGCATGCCTCTGACATCCCATACGTGCACATTAGAGCTGtcatcaattaaaataacaattagcAACTCCAGTTGCGGTTGCTTATTAAGAAATGAATGCAGTTTAAACCAACGATGTGTTGAAAGTAAAGTAAAACGTTAAATTACTTATTGTGTGGTTGACTGTTAAAGTGTGGGTGCAGACTGTGCTCTATATAGAACCATAAACTATATACAGGCATCTCCCATAAGCCTTAACCCGCTTCGAGAACACATCGGCTCCCATGTTTATGAGTTTGTAAAAGTTTTGGTGTTCAAATACAAACCAATGCAGATCCCAAAGACTGGACAAACGCTGAGAATGACCCCCTGATTAAACTTTGCATGTCTGAAA

Function

GO: NA

KEGG:

id description
K24647 PRDM15; PR domain zinc finger protein 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15107 lncRNA downstream 444915 13097991 ~ 13100224 (-) True G12235
TU14937 lncRNA downstream 906441 12638493 ~ 12638698 (-) True G12096
TU14892 lncRNA downstream 1153731 12387798 ~ 12391408 (-) True G12058
TU14871 lncRNA downstream 1189775 12354675 ~ 12355364 (-) True G12046
TU14864 lncRNA downstream 1191758 12353160 ~ 12353381 (-) True G12041
TU15249 lncRNA upstream 68444 13627255 ~ 13639150 (-) True G12359
TU15247 lncRNA upstream 79492 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA upstream 79492 13638303 ~ 13639590 (-) False G12358
TU15246 lncRNA upstream 79886 13638697 ~ 13639590 (-) True G12358
TU15263 lncRNA upstream 98632 13657443 ~ 13659659 (-) True G12373
AMCG00016247 mRNA downstream 2504 13535694 ~ 13542635 (-) True AMCG00016247
AMCG00016244 mRNA downstream 10164 13522174 ~ 13534975 (-) True AMCG00016244
AMCG00016248 mRNA downstream 50565 13484337 ~ 13494574 (-) True AMCG00016248
AMCG00016243 mRNA downstream 68094 13467358 ~ 13477045 (-) True AMCG00016243
AMCG00016238 mRNA downstream 473497 13065216 ~ 13071642 (-) True AMCG00016238
AMCG00016245 mRNA upstream 3360 13562171 ~ 13582666 (-) True AMCG00016245
AMCG00016251 mRNA upstream 26096 13584907 ~ 13595151 (-) True AMCG00016251
AMCG00016252 mRNA upstream 96227 13655038 ~ 13675532 (-) True AMCG00016252
AMCG00016257 mRNA upstream 270949 13829760 ~ 13840039 (-) True AMCG00016257
AMCG00016258 mRNA upstream 300522 13859333 ~ 13874048 (-) True AMCG00016258
TU15028 other downstream 674579 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 674579 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 682269 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 1216106 12323161 ~ 12329033 (-) True AMCG00016211
TU14519 other downstream 2697328 10846931 ~ 10847811 (-) False AMCG00016176
TU15638 other upstream 1231392 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 3299730 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 3299730 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 3299730 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 5532428 19091239 ~ 19105381 (-) True G13367

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005326 True 3078 mRNA 0.49 25 NC_007121.7 33269371 ~ 33297864 (-)