RNA id: TU15219


Basic Information

Item Value
RNA id TU15219
length 2371
lncRNA type sense_over
GC content 0.39
exon number 1
gene id AMCG00016246
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13543348 ~ 13559184 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagtccgAGCAGCCGCCACAGGACCAGCAACCCCAGCAACCGGCTCAGCAACAGATGTACGGCTACTAGCCTCTGACCTGACTCTGAGGCAGATCTGTGGTCTCGAATAGCTTCTGTCCTAAATGAACTTGCGATTAGCTTGAGTTGTAAAACTGGAAAGAGAGGTTGTCAATCTTAGGCAGAAGAATGTAAGTAGTGCTCATTCCGTGGCATGCCTCTGACATCCCATACGTGCACATTAGAGCTGtcatcaattaaaataacaattagcAACTCCAGTTGCGGTTGCTTATTAAGAAATGAATGCAGTTTAAACCAACGATGTGTTGAAAGTAAAGTAAAACGTTAAATTACTTATTGTGTGGTTGACTGTTAAAGTGTGGGTGCAGACTGTGCTCTATATAGAACCATAAACTATATACAGGCATCTCCCATAAGCCTTAACCCGCTTCGAGAACACATCGGCTCCCATGTTTATGAGTTTGTAAAAGTTTTGGTGTTCAAATACAAACCAATGCAGATCCCAAAGACTGGACAAACGCTGAGAATGACCCCCTGATTAAACTTTGCATGTCTGAAACCTTTTTAGGTCTGTTTCTGAAGCATTTCATTATGTAATTCAAATATGTttacaaacattacataaattGACTAATACTTTACTCTGGAATAACAATGTAAAGTAATGAAGTAATGTTTACTTCAGAGAAGCTTAGATGGTGCTTTCAATGGCTCAGACTGTGACTCACAGACTGTTTTACAAtcaactttgtttttgtgtgtgtgcaagtttTATTGCAGTCCCTGGCCCCGTGTGAACACCTGCTGGGGTAAGAACAGAAAGTCTCCGGCCTGGCGGGACACCTCGGCTGATTTCAACCACTCTTGAACACTagtataagtgtgtgtgtattattgtagAGAAGAAATGGGAGCCTTACTTGGCCCACATGCAGAGACAATGTGACAAGAAtgtactgcaaaacaaaaccctcccatacatttattttttgcttcctTCGTCTTTTAAATGCCATCTTATGCTTCCCTGAATAATCATGGAAGTGATACGGGGCTGTAGGTCTTGGGGACCAATCAGCTGAGACTGGACCGTCTCAAACAGTGATAGTTTGAAGTTGCCAAGAGTAATGTGTACATTATCGGTGTAGAATTGAGGGTGACATACTTTAGTTATAAATATGACGCCATGAAGAATGCCTTGaggaaatacaatgtttttttctttcattaaatgaTAATGGTAGAATGAGTTAGTGATTGATGAGGGATTTTCTCTGTAGATTCAATAGTGCCTTTGTGGgcattgtttttgatttaatactttgttttcctACCTTCCCTAGTTATgtcactgtttttttaaagtgatcATATTGGCATGCTATTGGCATACAGCAAAAATTGCATTAATGCTGCAGGAAGCCCTTGTGTTCCTTTTGTTATGATTGTATTGAGGATAGTTATCTCCTCTGTGAATTCAAGAATGAGATAAATGCACAAAAACTAAAGTTTCTTTAatcagttcattaaaaaaataaaggagcaGAAATCTTGTGATAAATTGCTTTGttgttaatttgtaaaatgagatgaattatgaattatagTGAAGCTCCGAATTTAATCAGAGGAGCTACAAGTTCTGCACTATCGGCAAGTTTCAAAAATGACTGCTCATACATTGCAATGTCAACCTAATAGCTGTTTAAAATTAAGGCATCAAATACCAGACTCATAAATAACTCAGTGCTCAATATTTATCCCACCATCTTCCTAAAgacatgcatgtgtgtggagTTTGGAGATTGCAGGTCCTCAATTGCTCCTCTTAAGCACAAAGGTCAAATATCATGGGTCTCCACTGTTCTACAgcatttgtaatgcatgtaGCACCTTGGTCTTGATTTGTGTCATGAAGAGCTAAATCCTGGCGGAAAACTCTTCTCACTGTCTGAGAAGAAATCTTGTGAAGGGGAAATTGTACAAAGTGTTGACAGGACACAACATTGATGCACAAGATCAGGGGCTGCCATTCCTGGTCCACTCCAGACAACTTTCCAACCCCTAATACTCGCAGAAGAGTAGTTAAACTGGTTCTTATTAAAACAGGAATTGTCAAATGCTCAGGTGATTGAAAACCTGAAGACACTGTAGCTTCCATGACCAGAATCGTGGACCGTTGTGCTAgattaatattttctgttgttttgtttgtttttgttttttcatgagaaaaaaaaactatatatatttttaataagatgccTGATCATGAAAGAGCATAGGAACTGAagcgtttcatttttttattttctccaattgTCCTTGTGTGTCAAACTGCAATGTGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15107 lncRNA downstream 443124 13097991 ~ 13100224 (-) True G12235
TU14937 lncRNA downstream 904650 12638493 ~ 12638698 (-) True G12096
TU14892 lncRNA downstream 1151940 12387798 ~ 12391408 (-) True G12058
TU14871 lncRNA downstream 1187984 12354675 ~ 12355364 (-) True G12046
TU14864 lncRNA downstream 1189967 12353160 ~ 12353381 (-) True G12041
TU15249 lncRNA upstream 81537 13627255 ~ 13639150 (-) True G12359
TU15247 lncRNA upstream 92585 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA upstream 92585 13638303 ~ 13639590 (-) False G12358
TU15246 lncRNA upstream 92979 13638697 ~ 13639590 (-) True G12358
TU15263 lncRNA upstream 111725 13657443 ~ 13659659 (-) True G12373
AMCG00016247 mRNA downstream 713 13535694 ~ 13542635 (-) True AMCG00016247
AMCG00016244 mRNA downstream 8373 13522174 ~ 13534975 (-) True AMCG00016244
AMCG00016248 mRNA downstream 48774 13484337 ~ 13494574 (-) True AMCG00016248
AMCG00016243 mRNA downstream 66303 13467358 ~ 13477045 (-) True AMCG00016243
AMCG00016238 mRNA downstream 471706 13065216 ~ 13071642 (-) True AMCG00016238
AMCG00016245 mRNA upstream 16453 13562171 ~ 13582666 (-) True AMCG00016245
AMCG00016251 mRNA upstream 39189 13584907 ~ 13595151 (-) True AMCG00016251
AMCG00016252 mRNA upstream 109320 13655038 ~ 13675532 (-) True AMCG00016252
AMCG00016257 mRNA upstream 284042 13829760 ~ 13840039 (-) True AMCG00016257
AMCG00016258 mRNA upstream 313615 13859333 ~ 13874048 (-) True AMCG00016258
TU15028 other downstream 672788 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 672788 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 680478 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 1214315 12323161 ~ 12329033 (-) True AMCG00016211
TU14519 other downstream 2695537 10846931 ~ 10847811 (-) False AMCG00016176
TU15220 other upstream 8867 13554585 ~ 13559184 (-) False AMCG00016246
TU15638 other upstream 1244485 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 3312823 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 3312823 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 3312823 16858541 ~ 16861179 (-) False G12945

Expression Profile