RNA id: AMCG00016275


Basic Information

Item Value
RNA id AMCG00016275
length 2205
RNA type mRNA
GC content 0.55
exon number 10
gene id AMCG00016275
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14192347 ~ 14199159 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGCGCAGATGCCTCATTCGCACCAGCCGTACAGTGACCGTCACCAGCAGGGTACGGACTCATCTGCCACGGCGTTGCCGTACAGTGACCAGGTCCAGCAGTCTACTGCCAACCAGGTGATTGCTGATGTGGTCTTGTTACAGAGGCGGATGCCCCAGACCTTTCGTGAACCAGCCACTGCTCCATTGAGGAAGCTCTCTGTTGACCTgatcaaaacatacaaacacatcaaTGAGGTATACTATGCAAAAAAGAAGAGACGACACCAACAAGGCCAGGGCGACGACTCCAGTCACAAGAAAGAGCGGAAGGTGTACAACGATGGCTACGACGACGACAACTACGATTACATAGTGAAGAACGGGGAGAAATGGATGGACCGCTATGAAATCGATTCCTTAATAGGCAAAGGCTCGTTTGGACAGGTTGTAAAGGCGTATGACCGTGTTGAGCAGGAGTGGGTGGCAATTAAGATCATCAAGAACAAGAAGGCTTTCCTGAATCAAGCCCAGATTGAAGTGCGGCTCCTCGAGCTTATGAACAAACATGACACCGAGATGAAATACTACATAGTTCACCTGAAGCGTCACTTCATGTTCAGGAACCACCTCTGCCTGGTGTTCGAGATGCTGTCGTACAACCTCTATGACTTGCTGCGCAACACCAATTTCCGCGGCGTCTCTCTGAACCTGACCCGCAAGTTTGCCCAACAGATGTGCACGGCCCTGCTGTTCCTCGCCACACCTGAGCTCAGCATCATCCACTGTGACTTAAAACCCGAGAACATCCTTCTGTGTAATCCTAAGCGAAGCGCCATCAAAATAGTAGACTTTGGTAGCTCTTGCCAACTGGGACAAAGGATATACCAGTATATCCAGAGTCGATTCTACCGGTCCCCCGAAGTGCTGCTGGGCATGCCTTACGACCTCGCTATCGACATGTGGTCTCTCGGCTGTATTCTAGTAGAAATGCACACCGGAGAGCCTCTCTTCAGTGGAGCCAATGAAGTGGATCAAATGAACAAAATAGTAGAAGTTCTTGGTGTCCCTCCCAATCACATATTGGACCAGGCACCCAAAGCCAGGAAGTTCTTTGAGAAGTTGTCAGATAGCACATGGGGTGTAAAGAAGACCAAAGATGGAAAACGGGAGTATAAACCCCCAGGTTCCCGTAAACTCCACAACATCCTCGGGGTGGAGGCGGGGGGTCCAGGAGGGCGACGTGCCGGGGAATCGGGCCACGCTGTAGCCGACTACTTGAAGTTCAAGGACCTCATCTTAAGAATGCTGGACTACGACCCTAAGACTCGCATTCAGCCCTACTATGCCCTGCAGCACAGCTTCTTCAAGAAGACGGCGGATGAAGGCACGAATACGAGCAACAGCGTGTCCACGAGTCCGGCACTGGAGCAGTCGCAGTCTTCAGGAACCACATCTAGCACCTCGTCGAGTTCAGGAGGCTCCTCTGGAACCAGTAACAGTGGACGAGCACGGTCCGACCCAACTCACCAGCACCGGCACAGTGGAGGACACTTCAGCGCCGCAGTGCAGGTGATGGACTGTGAGACCCACTGCCCACAGGTGAGACAGCCGTATCCACCTCCCGTGGGATGGACGGGTGGTGACGGTCCCCAGCAGGTCACCGTGGAGACTCATCCAGTCCAGGAGACCACTTTCCACGTGCCTCCCCCGCAGCCCAGCGCATTACACCACCACCCGAGCAGCAACAGCgcgcaccaccaccaccaccaccaccaccaccaccaccacggACAGGGCCTGGCCACGCGCAACCGCCCGCGGCTCTACAACTCCCCCACCAACAGCGCCTCCACGCAGGAATCCATGGAGGTGGTGCACAGCCACCTGTCCATGACCTCCCTGtcttcctctgcctcctcttcctccacatCTTCCTCCTCGACTGGGAACCAAGGCAACCAGACCTATCAGAACCGCCCGGTCGCTGCCAACGCCTTGGACTTTGGCCAAAACGGCAGCGCGGACATGGGATTGGGAGTGTTCTCGAATCCCCGTCAAGAGACTGGCATCACGGGACATCCGACCTACCAGATTGCGACGAACACGGGGGCGGCTCACTACATGACTGAGGGCCATCTGGGCATGAGACAAGGCATTGACAGGGAGGAGTCCCCCATGGCGGGGGTCTGTGTCCAGCAGAGCTCTGTGGCCAGTTCGTGA

Function

GO:

id name namespace
GO:0046777 protein autophosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004712 protein serine/threonine/tyrosine kinase activity molecular_function

KEGG:

id description
K08825 DYRK1; dual specificity tyrosine-phosphorylation-regulated kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15263 lncRNA downstream 532688 13657443 ~ 13659659 (-) True G12373
TU15247 lncRNA downstream 552757 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA downstream 552757 13638303 ~ 13639590 (-) False G12358
TU15246 lncRNA downstream 552757 13638697 ~ 13639590 (-) True G12358
TU15249 lncRNA downstream 553197 13627255 ~ 13639150 (-) True G12359
TU15533 lncRNA upstream 221262 14420421 ~ 14427290 (-) False AMCG00016281
TU15536 lncRNA upstream 228466 14427625 ~ 14428817 (-) True G12585
TU15547 lncRNA upstream 232453 14431612 ~ 14436531 (-) True G12594
TU15548 lncRNA upstream 232559 14431718 ~ 14436531 (-) False G12594
TU15549 lncRNA upstream 232559 14431718 ~ 14436437 (-) False G12594
AMCG00016268 mRNA downstream 59693 14086954 ~ 14132654 (-) True AMCG00016268
AMCG00016266 mRNA downstream 170399 14012696 ~ 14021948 (-) True AMCG00016266
AMCG00016267 mRNA downstream 221495 13956767 ~ 13970852 (-) True AMCG00016267
AMCG00016263 mRNA downstream 255497 13936623 ~ 13936850 (-) True AMCG00016263
AMCG00016262 mRNA downstream 270391 13912922 ~ 13921956 (-) True AMCG00016262
AMCG00016274 mRNA upstream 34539 14233698 ~ 14258146 (-) True AMCG00016274
AMCG00016276 mRNA upstream 68477 14267636 ~ 14267815 (-) True AMCG00016276
AMCG00016277 mRNA upstream 69007 14268166 ~ 14269315 (-) True AMCG00016277
AMCG00016280 mRNA upstream 107140 14306299 ~ 14324175 (-) True AMCG00016280
AMCG00016284 mRNA upstream 184741 14383900 ~ 14389479 (-) True AMCG00016284
TU15220 other downstream 633163 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 1321787 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 1321787 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 1329477 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 1863314 12323161 ~ 12329033 (-) True AMCG00016211
TU15638 other upstream 591044 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 2659382 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 2659382 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 2659382 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 4892080 19091239 ~ 19105381 (-) True G13367

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016892 False 5881 mRNA 0.44 11 NC_007126.7 19884246 ~ 19896816 (+)
grasscarp (Ctenopharyngodon idella) CI01000203_00086596_00095920.mRNA True 4017 mRNA 0.55 12 CI01000203 84952 ~ 96172 (-)