RNA id: AMCG00016280


Basic Information

Item Value
RNA id AMCG00016280
length 2301
RNA type mRNA
GC content 0.56
exon number 11
gene id AMCG00016280
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14306299 ~ 14324175 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGAAAAGTCTAAGAATGCTGCGAAGACAAGacgagaaaaagaaaatggagaaTTTTATGAACTGGCAAAATTATTGCCCTTGCCTTCAGCCATCACCTCCCAGTTGGATAAGGCTTCGATCATCCGACTGACTACAAGCTACCTGAAAATGAGAGCTGTGTTTCCCGAGGgTTTAGGAGATGCTTGGGGACAGCCGGCACGCATTAGCCCATTGGACAACATGGCAAAAGAACTGGGCTCCCACCTGCTTCAAacGCTGGAtggctttgtgtttgttgtagCTTCTGATGGGAAAATCATGTACATCTCTGAGACAGCCTCTGTCCACCTGGGATTGTCACAGGTGGAGCTGACCGGGAACAGTATCTACGAGTACATCCACCCCTCTGACCATGACGAGATGACAGCGGTCCTGAGTGCCCACCAGCCTCTGCACCCTCACTTCCTCCAAGAGTATGAAATGGAGCGGTCCTTCTTCCTGCGTATGAAGTGTGTCCTGGCCAAACGCAACGCAGGCCTGACCTGTGGAGGCTACAAGGTGATCCACTGCAGCGGCTACCTGAAGATCCGCCAGTACATGATGGACATGTCCCTGTATGACTCCTGCTACCAGATCGTGGGGCTGGTGGCGGTGGGGCACTCGCTCCCCCCCAGCGCCATCACTGAGATCAAGCTGCACAGCAACATGTTCATGTTCCGGGCCAGCCTGGACCTCAAGCTCATCTTCCTGGACTCTAGGGTGGCAGAGCTGACTGGCTACGAGCCTCAGGACCTGATAGAGAAGACCTTATACCACCACGTCCATGGCTGTGACGTATTCCATCTGCGCTACGCCCACCACCTCCtgctggTAAAAGGCCAGGTCACCACCAAGTACTACAGGCTGCTGTCCAAGCATGGGGGCTGGGTGTGGGTGCAGAGCTATGCCACCATCGTACACAACAGCCGCTCCTCGCGCCCCCACTGCATCGTCAGCGTCAACTACGTCCTCACGGAGATCGAGTACAAAGACCTGCAGCTCTCCCAGGACCAGACCAGTGTGTCGAAACCCGGGATCCCCTACCGCAGCACCATGACTACCTCACAGGACTCCCGAAAGCAACTCAAATCCAAAGCAGTGAAGATCAAAACCAAACTCAAAACGGCTCCCTACCCACAGCACTACAGCTCATTTCAGCCAGACAAACTGGAGTGCACCCCCCAGTCCGGGAGCTGGAAGGAGAGCCCACCGTACAGCATGGTCCCCAGTCAGGATCAGGTCGCCGTGCCCGAGGGTGGGGATGTGCTGTGTGGCCCCCCTTATGGACTGGCCTTCTCCTACCCATATGGACACTTGCCCGTGGAGCCCCCTGCCCTGGTGGGAAGGAAGACGCCCTTGGCCTCCAAGATTCGGCAACAGCCCCAGAGCTCCCCCTGCCAGGCGGCCCGGCACCTCCTGACCTCCCTGCAGGGCCGAGGGGAGACCCGCTGGAGTTGCGCCAACCCTGGCCTGGCCCGCAGCTCCTCCAAACCTCAGCAGAGCCATACGGCCACTGCCCCTCCACATCCGGCCACAGCAGCATACCCAGGGCCGGGGGCGAACAGAAGATACAGTGCCGAAGCAATACCTGAAGGCTTTTCCAGCTGCTCAACCTCCAGACCTAACAGCAGGTTCAAGGAAGAGCCTTATGAACATAACACGGTTGGGCAGAACAAAATAGAAGCCCGGCTACACACTCCTCAACAGGTCACTAAAGACGACAACAAGACGCAGTTCATCCGGGACCCAAAGGAAGCCCTGGGCTGCGTGGAAAAGCCCTTCTCCAGCTCTCTGAACAGCACCATGGCCGGCAAGGCCAACTGCGAGCACCCCAAGCAGCTCAACACACTCAGCCAGCACTTGCCAATGCAGGTGGTATTTGAGCAAACGAGAAGGATCTGCATGAAGGAGCCTCAATATGCACACCTGGCTGAGCATGCATCCTTAGAGCAAATGGACAATGGCGAACGGGAACCCCCCAAATTAATGGAGCAGGAGAGCACAGAGGAGCAGAAGATGTTCATGGGAATGGGCTTGGCGGGACAAGCTCCATATGTGTCTCTGAACTTCCACCACGTCTTGGCCAAGCATAGCTCCTTCCAGGCGCCGCCATATGCACTGGCGGGCCATTTAACGGACAATTACAGCTACAGAGGGGAGGAGATGAACCCATACCTTTACAAAAGCCAAAGCCCAGCTTCCAGCTCCTCGCCCGAGACTCACAGAGAAATCCCCCATTACATCGGAACGTCCGTAATCATAACCAACGAAAGGTGA

Function

GO: NA

KEGG:

id description
K09100 SIM; single-minded

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15263 lncRNA downstream 646640 13657443 ~ 13659659 (-) True G12373
TU15247 lncRNA downstream 666709 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA downstream 666709 13638303 ~ 13639590 (-) False G12358
TU15246 lncRNA downstream 666709 13638697 ~ 13639590 (-) True G12358
TU15249 lncRNA downstream 667149 13627255 ~ 13639150 (-) True G12359
TU15533 lncRNA upstream 96246 14420421 ~ 14427290 (-) False AMCG00016281
TU15536 lncRNA upstream 103450 14427625 ~ 14428817 (-) True G12585
TU15547 lncRNA upstream 107437 14431612 ~ 14436531 (-) True G12594
TU15548 lncRNA upstream 107543 14431718 ~ 14436531 (-) False G12594
TU15549 lncRNA upstream 107543 14431718 ~ 14436437 (-) False G12594
AMCG00016277 mRNA downstream 36984 14268166 ~ 14269315 (-) True AMCG00016277
AMCG00016276 mRNA downstream 38484 14267636 ~ 14267815 (-) True AMCG00016276
AMCG00016274 mRNA downstream 48153 14233698 ~ 14258146 (-) True AMCG00016274
AMCG00016275 mRNA downstream 107140 14192347 ~ 14199159 (-) True AMCG00016275
AMCG00016268 mRNA downstream 173645 14086954 ~ 14132654 (-) True AMCG00016268
AMCG00016284 mRNA upstream 59725 14383900 ~ 14389479 (-) True AMCG00016284
AMCG00016283 mRNA upstream 65334 14389509 ~ 14393661 (-) True AMCG00016283
AMCG00016281 mRNA upstream 96181 14420356 ~ 14427236 (-) True AMCG00016281
AMCG00016282 mRNA upstream 113213 14437388 ~ 14456052 (-) True AMCG00016282
AMCG00016287 mRNA upstream 253682 14577857 ~ 14591958 (-) True AMCG00016287
TU15220 other downstream 747115 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 1435739 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 1435739 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 1443429 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 1977266 12323161 ~ 12329033 (-) True AMCG00016211
TU15638 other upstream 466028 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 2534366 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 2534366 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 2534366 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 4767064 19091239 ~ 19105381 (-) True G13367

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00055130 False 1761 mRNA 0.56 11 NC_007115.7 929557 ~ 948776 (-)
grasscarp (Ctenopharyngodon idella) CI01000203_00051348_00060939.mRNA True 2479 mRNA 0.54 12 CI01000203 50985 ~ 61009 (+)