RNA id: AMCG00016281


Basic Information

Item Value
RNA id AMCG00016281
length 1880
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00016281
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14420356 ~ 14427290 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGTGCACAACATCAGCAAGATTTGCTGCATGCAGGAACTGATGAAGAAGCTGGCAGTTAAGTATAGTTTTCACAGGAAGAGGGGACAGGAAAGACTCACGGGTGTATAATACGCGCAGCTTCAGCATAGAGAACCACTTGTCTCCACAATGGTTTCTCCGCTGCTATCGCTTTTTACGGTCTGCACAATTCTCACAGCATGTATGGCTTTCACAGATAACATCACAGAAGCTTTGAAAGGCAGTTCTGTCATTCTTTTCTGCAAAATTTCCTTTGATTCACAGACTGATTCAGACCTTATTTCAGTTAAGTGGAGGAGAGTTGAAAGCTCCAGAAAAATCTGTGAATACCTTGTACAAAATGAGACTATCATCCTAAACAGCTGTGATAACCGGATAGTGGTCAAATGGACACCTCACCAAATTGAAATCAAAGATATTGAGACCAAGGACACAGGTCAATATTCATGCACTGTTTCAAGACAGATACCCCCACCAGTGGAGGAGAAAGAATACACCATGAATCTTTCAGTACAAGCTCCCCCAGTCATGAAACTGGATATTGTGAACATCTCTTACAATCGCTCTGAGCAATGCATCAGCCTGGTCTGTCTGCTGGAGTCCTTCAGACCTCGAGGAATTAACATCACATGGACCAGAAAGGGAGAGTGGATATCGGAAGGGGTGACCTTCAATGATTCGGTTCTGTCCAATGACGGCTCTTTCAGCGCGGCCAGTTACCTGACATTTTGCGCACCAAACTTGGAGGAGGAAGGTCTGATCTCTTGCCTCGTAAACCACACTGCCAGTCCCGTCATCCTTAATAAAACCATCACTGTTCCTCCAAAGAAAGGTCGCACACTGAGAATCACATGCAGTAATCAGCCCACTGTCTATACCAACGAGGTGTATGAGAACCTTAGTTTTGGCACGTTGGTAACGCAGACAGAGAGGACATCACAGGACGAGAGTagtagtaaatgtatttatgaaaacTAACTGCCCTGAGTGCAGTGTGACCTCaacactttcatttatttttccctcactgtggcCACAGCATGTCTGaatgtatctgtttgtttttatatcacTTTTTGATACAGTCTGACTGTAATGTCATCCATGACCCTAAGTGAATAACTGTAGGTCTGTACCCTAGCCTGGCTGTTAATATTGTAACAGTCATCTCCAGCCTGGTCTTGAGGATCATCTGTCTTCTTAATGTCATAgctcaccctaaatcaccaatttgtACTTGCAACGTGTGAGTAATTAATCAGTTAAGCGAGGCAAGCAAGGGAACTGGAGGAAGTCAATAAATTATTCCAGTGGTTTCTAAATGAATGAgattataaacaattaatgaagtacttccaggtgtttaaaAATTTGTGACAGAAGAGTGACCTCTCAAGCCACCTGGACaagggctctccaggaccataGTTGGAGATGCCTGGACTATAATTACAACACAAGAAAGTAAACCTGTAACACAGTGTGTTTGGTTTCATATTGAAAACTGTATGTAACGTTTTGTTAAATTGGGTGTAAATGGATTCTCCTTcctgccatttatttttccccagttTAGCCTATGTGAGTCTGAATGTGTTGGTAAAGATGTGTGTGTTCATACATTACACATGGTTCTATATATTTGTGCACCATAACTGGTATCCTTGTTTTTATATCAAACTTATGTAAAGCTCCTGTGTACGTGTCCTTTCTCTTGTTTCTGGCCATGTTTACAGGAGGTGCAGATGCTGAGGtgctgacaaaataaaacagctgatGATATTCTCTAAGTGCTCCATTTCATTGTGGGCCTGTCCTTTTTCAGAGGTTCTCATTATGTTGTTGTCTCTTAAGTCTGA

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05310 Asthma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15263 lncRNA downstream 760697 13657443 ~ 13659659 (-) True G12373
TU15247 lncRNA downstream 780766 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA downstream 780766 13638303 ~ 13639590 (-) False G12358
TU15246 lncRNA downstream 780766 13638697 ~ 13639590 (-) True G12358
TU15249 lncRNA downstream 781206 13627255 ~ 13639150 (-) True G12359
TU15536 lncRNA upstream 389 14427625 ~ 14428817 (-) True G12585
TU15547 lncRNA upstream 4376 14431612 ~ 14436531 (-) True G12594
TU15548 lncRNA upstream 4482 14431718 ~ 14436531 (-) False G12594
TU15549 lncRNA upstream 4482 14431718 ~ 14436437 (-) False G12594
TU15550 lncRNA upstream 36381 14463617 ~ 14463823 (-) True G12595
AMCG00016283 mRNA downstream 26695 14389509 ~ 14393661 (-) True AMCG00016283
AMCG00016284 mRNA downstream 30877 14383900 ~ 14389479 (-) True AMCG00016284
AMCG00016280 mRNA downstream 96181 14306299 ~ 14324175 (-) True AMCG00016280
AMCG00016277 mRNA downstream 151041 14268166 ~ 14269315 (-) True AMCG00016277
AMCG00016276 mRNA downstream 152541 14267636 ~ 14267815 (-) True AMCG00016276
AMCG00016282 mRNA upstream 10152 14437388 ~ 14456052 (-) True AMCG00016282
AMCG00016287 mRNA upstream 150621 14577857 ~ 14591958 (-) True AMCG00016287
AMCG00016289 mRNA upstream 282152 14709388 ~ 14733458 (-) True AMCG00016289
AMCG00016293 mRNA upstream 357962 14785198 ~ 14791045 (-) True AMCG00016293
AMCG00016294 mRNA upstream 422614 14849850 ~ 14851113 (-) True AMCG00016294
TU15220 other downstream 861172 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 1549796 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 1549796 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 1557486 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 2091323 12323161 ~ 12329033 (-) True AMCG00016211
TU15638 other upstream 362967 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 2431305 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 2431305 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 2431305 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 4664003 19091239 ~ 19105381 (-) True G13367

Expression Profile