RNA id: AMCG00016303


Basic Information

Item Value
RNA id AMCG00016303
length 294
RNA type mRNA
GC content 0.52
exon number 2
gene id AMCG00016303
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15137408 ~ 15139859 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCCACCAGAGCGCTGTACCCGACATTGATGTCACACGGCTATGTGGATCAGTGGACGGAGTCATTGTGTGGCAGTTCAGCACGCTCTTCTCCACCGTAGACAGATGGTGCTTTGATGATGTCCCCTCCATGTCAGAGCACCTGAAGGTCTGTCCTTTCTACCAGACAGAAGTGAGGAGTGAGCCGGTGGGGCTGACCAGCATGTGTGAAGCTGATGCACAAAGATCTGAGAGACAGCAGAGGCCGAGCCTGGTGTCACAgatcttaaaaacaagaaaacatttgccatga

Function

GO:

id name namespace
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006101 citrate metabolic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0045333 cellular respiration biological_process

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15634 lncRNA downstream 348990 14786993 ~ 14788418 (-) False AMCG00016293
TU15550 lncRNA downstream 673585 14463617 ~ 14463823 (-) True G12595
TU15547 lncRNA downstream 700877 14431612 ~ 14436531 (-) True G12594
TU15717 lncRNA upstream 53343 15193202 ~ 15193641 (-) True G12702
TU15723 lncRNA upstream 277164 15417023 ~ 15417518 (-) True G12707
TU15762 lncRNA upstream 407191 15547050 ~ 15605487 (-) True G12743
TU15855 lncRNA upstream 685052 15824911 ~ 15825237 (-) True G12807
TU15857 lncRNA upstream 688907 15828766 ~ 15829026 (-) True G12809
AMCG00016294 mRNA downstream 286295 14849850 ~ 14851113 (-) True AMCG00016294
AMCG00016293 mRNA downstream 346363 14785198 ~ 14791045 (-) True AMCG00016293
AMCG00016289 mRNA downstream 403950 14709388 ~ 14733458 (-) True AMCG00016289
AMCG00016287 mRNA downstream 545450 14577857 ~ 14591958 (-) True AMCG00016287
AMCG00016282 mRNA downstream 681356 14437388 ~ 14456052 (-) True AMCG00016282
AMCG00016302 mRNA upstream 502 15140361 ~ 15142142 (-) True AMCG00016302
AMCG00016304 mRNA upstream 2397 15142256 ~ 15358334 (-) True AMCG00016304
AMCG00016310 mRNA upstream 417010 15556869 ~ 15564100 (-) True AMCG00016310
AMCG00016308 mRNA upstream 437574 15577433 ~ 15596800 (-) True AMCG00016308
AMCG00016309 mRNA upstream 481197 15621056 ~ 15624452 (-) True AMCG00016309
TU15638 other downstream 345439 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 1578224 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 2266848 12862099 ~ 12870560 (-) False AMCG00016226
TU16024 other upstream 1718682 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 1718682 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 1718682 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 3951380 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 4995338 20135197 ~ 20135547 (-) False AMCG00016453

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000028_04445707_04445922.mRNA True 257 mRNA 0.48 1 CI01000028 4445666 ~ 4445922 (-)