RNA id: AMCG00016315


Basic Information

Item Value
RNA id AMCG00016315
length 8457
RNA type mRNA
GC content 0.49
exon number 33
gene id AMCG00016315
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15804860 ~ 15824266 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAAAGTCGGGTCACGTTGCGGATACTAGGAGATTTTACATGGGCCAGCACCAAGTCTGGAGGAAGAAGAGCAATCCAAACCACCTGATCTGGAAGGATCGGAAAGCAAAGAAAACCATGGAGGACCTGCCAACAGAAAGGCACaCAGTGGATAAGCAGCTATGGATTGGAGACTCAACTTTATCTATGGATGAAGACATATTACAAGCACTGGATGCTTTTGTACCAGATGGGCCTCCACTCTCTGAAAAGCCCAGTGTGCTTTCACATTCCAAAGAACTGAAAAATGCCAACCGTGGGCACAAACCTGATAGAGTGGTACCTGAAACTGAAAGCCTGCACTTTACATGGGTTAAAAGTGATATAAAGGCAGATTTGGAATGTCAAGAAAAAAGTCATTCTAATCAAAGAACTGTTCCAGACATTCCACAGCCGGAAAGGTCTCAGCTTTGTTTGGGAGCTTCGGAAGACATTGCTAAGAAGCTTGTATTTAGTGAGTATTCAGTGAACAAGAAATCCCCTTCAGAAAATTCAAGACCGCAAACTAAGCATAAAAGACGGAGGCCTTGTTCATTATCAAGCGCTGAGTCAAGTGAGTCACAAGGCCCTTCATCTTCCAAGCGAGCGTCTTTGctcaaaaaaacatctacaagAACAGTAAAATCCAGAGCAAACGACAATGGGCAAAGACTTCGACAAAGGGCTTTCGAGACCAAAACATTTACTTCCATTTCCCAGAATCCCAACATCTCTCTGAACACGTCAAAGGATTATATTCTGTTCAGCTCCACACACCTAGCTGTAGCTCTGCAGAAGAAGAAACTGCAGATTGAGCACCTCCCCACGGCGAACCTGTCTGCATCTGTGCTGACGCCTCCCCCTGGGCTGGACCTCAGCAGGGCTGACTGCAGCGTGCTGGGCAGCACTCCTACAGACATAGGACATAGTATTCACTTGGCTCTCCCTGCGGAGCAGTCAGACAAGCTGCTGCTGTCAAGCTGGGGTCTGCCCAAGCCGGTCCTGGACAAGTACCAGAGCCTTGGCGTGACCCGCATGTTTGAGTGGCAAGCCGAGTcTCCTACCAGTGCTGGGAAAACATTAGTTTCTGAATTACTGATTTTAAAAAGGGTGCTGGAGACCAGAAGAAAGGCTCTGTTCATCCTCCCTTTTGTGTCCgtggcaaaagaaaaaatgttttaccttcAGAATGTATTCCAGGAGGCAGGCGTCAGGGTGGAGGGTTACATGGGCAGTACCTCTGCTGCCGGGGGATTCTCTTCTCTCGACGTGGCTGTGTGCACAATCGAGAGAGCCAATGGGCTCATTAACCGGCTTATTGAAGAGAACAGAATGGACTTATTAGGAATTGTTGTGGTGGATGAGCTGCACATGGTGGGTGACTCCAGCCGTGGATATCTGCTGGAACTCCTGCTTACCAAGATACGCTATGTGACACAGAAGGCATCATCCAGAGATTCCTCTGAGAGCAGTCTGTCCCTCAGTGAAGGGGTGCAGATTGTGGGCATGAGTGCCACCTTGCCCAACCTGTCTTTATTGGCCGAGTGGTTAAAGGCTGACCTGTACCACACTGATTACCGACCCGTGCCACTGATGGAGTGGGCAAAGATTGGGGATAATATTTATGATGGCTCTATGACTTTGGTTAAGGAGTTTAAGCCTGTCCTACAAGTCAAGgGCGATGCAGACCACATTGTCAGTCTGTGCTTTGAGACGGTTCAGGGTGGCCACTCCGTGCTCCTGTTCTGTCCTTCTAAGAACTGGTGTGAGAAGCTGGCCGACAGCATCGCCAGGGAGTTCTATAATCTCAGACGCCGGGTTTCACACGCTCAAGAAGGCAAGGAAACCGATGCCCTTTTCTTATTGTTTGTTGGGTGCTCTATTACAGGAGGAGGTGGAAATGCTGACCCCCAGCCCCTGGCCCTCAGTGAGGAGGGTCTCCAGGATGTCTTGGCCCAGCTGAAGCGCTCTCCTTCAGGGCTGGACTCTATCCTGCAGCGCACCGTGCCATGGGGGGTGGCCTTCCATCATGCAGGCCTGACATTTGATGAGCGAGATATTATTGAAGGTGCCTTCCGTCAGGGCTACATCCGAGTCCTTGCTGCCACCTCGACGCTGTCTTCTGGGGTCAACCTCCCTGCGCGGCGCGTCATTATTCGGACACCCATCTTCAATGGCCGCCTCCTTGACATTCTGACCTACAAGCAGATGGCTGGGAGAGCTGGCCGCAAAGGGGTTGACACTATGGGTGAGAGTATCCTTGTGTGCAAAGAGTCTGAGCGAACAAAAGGAGTCACTCTTTTACAAGGGTCCCTCAAACCAATCCGCAGCTGTCTCATCCAGAAGGAGGGGGAAGGGGTCACCACTAGCATGATCCGAGCCATACTTGAGATCATTGTTGGGGGTGTTGCCAGCACTCCTGAACATGTGAAGATGTACGCTTCTTGCACATTGCTGGCAGCCAGCCTGTCTGCAGAGAACACAGGGGGCACTACTCCCAAAGGGAAGAGCGACCAGCACAGGGGATCCATCGAGTCATGTGTTGACTGGCTCATAAAGAACGAGTTCATCCAGATTCAGGAAGAGGGAGGCAAGGAACTGAAAAAGAGGTACTGTCCCACTCATTTGGGTGCCGCCACACTGTCCTCCTCCCTCTCGCCTCCTGAAGCACTGGGGATATTTGCAGATCTCCAAAGGGCAATGAAGGGCTTTGTGTTGGAAAATGACCTCCATATTTTGTATCAGATTACCCCAGTGTATGGCGAGTGGACTACAATTGACTGGTACCAGTTTTTTTGCCTTTGGGAGCATCTGCCCACTTCAATGAAGCGTGTGGCCGAAATGGTTGGAATTGAGGAGGGATTCTTGGCGCGCTCCGTCGGTGGAAAAATAATTGCTAAAAACGAAAGGCAGCATCGGCAGATGGCGATTCACAAACGCCTAGTGTTGTTGGATCTCATCAGTGAGGTTCCTCTGGAAGCTGTTGCCAAAAAATATGGCTGTAGTCGAGGGCAGCTTCAGTCTCTACAGCAGTCCGCTTCCACATATGCGGGTATGATCACGGTGTTCTGTAACCGCCTGGGGTGGCACAACATGGAGCTGCTGTTATCCCAGTTCCAGAGCCGACTCAGTTTCGGCATTCAGAGGGAGCTGTGTGACCTTGTGAGGATCTCCCTGTTGAACGCTCAGAGAGCCCGTGCGCTCTACAACGCAGGGTTCATCACGGTGTCCGAGCTGGCGAGGGCGAGCGCTGAGGACGTGGAGGCAGCGCTGAGGAAGGCAGTTCCGTTTAAAAGCTCTCGAAGAGCAGTGGATGAGAGTGAACATGAAGCCCAGGAGAGGAGGAATACACGCTGTATCTGGGTCAGCGGGAAGAGGGGCCTGACTGAGAGAGAGGCGGCCCTGCAGATTGTAAGAGAAGCCAGGCAGCTCCTCCAGCAAGACCTGGCCCTCCTTGGGATAATCTGGGACCCCGACACTCTTCCAGAGGAGAGACTGCAGTCTGCCGCGGGAGAATTACTGTCTGCCAAGCAGGGAGACGCACCGAGGGATCCCTCCTCCTCACACAGTGAACGCCCCCCCACCATGAAAGAGGCATCACACTCAGGAGATGGTGCTCAGACAGAACGTTGCAAGAAAAGTGGCAAAGATGAGTCAGATGTTGTAACTGTTAGCAATGGGAATGATTCCGCCAATTCCAAATTAAATGAACTGAAGTCTTCTGCTCACCCGACCTGGCCCAAAGAAAGAGGTGCTGGAAACCAAAGTGtggaacataaaacaaaagagtTTATTGTACTTCAGTCAGTAGAGACTAAGGAATGCTCCTCTGTGACTCCTGTGTCTGCAGCAGCATCAGTGACATCTAATAAATCCTCAGCTGTAAATCCAGGAGAAAGACGGCTGCCCTCTGGCTCAGCTGCCCTGTGCAAACTTGACAAAACCGAGAACGTAGTTAAAAAATatcatattgaaaatgaaatggttgTAGAACAATCATCTGAAGTTCTTGGCAGATCTTCAACAGACAAAGAATCTGACATATTAACTGAATCATTAAAAGCCCACATTTCCTCCAACATGAGTAACatgcttaatttaaaacatgggaGAGTTAGTCCGTTCTCTCTGAACCAGGCGTCCAAGCGTAGGAAGATGGGCTGTGAGACTGGAACTGTTGAGCATGAtgaaatcacaaacaaatgTGTCATTTCTGAGGCACTTGTAAGTGTAGAGACTCTGGTAAGGGCTAAACCTCCtggaaaacaagacaaaaacgTTCTTCCACTGTCCGTGAATAATTTCCCATCTGTCAGCGGTGAAAAAAAGAATGAGAAACTGGAACGGTGCTGCATTGAAAACGGCTGTGGGAAACCGCTTGAAACCGAAAATGGAAAAAGTGCTGGTGAAGTCACACAGACTGATCTTAATATAAACCAGTCCAAGATGGTGAGCGGTAAGGGTCTTCTGGAGAGACGTGCAGCTAATTTATTACCAAAACggcaaactgaaaatgaattgtcCTTCCAAACTGATCAAATGTGCAAATCTCCTGACCTGTATGGACAGGAGGAGTTTGGCGAGAGTTTTCAGCTTGATACACAAACTGAGAGAATAATCATGCAGCGGGATTTGACGATTCCTACCTCTGACACGCATCTGAAAGGAAGCTCACCTGGAAAAGTACTTGAGAAAACCTGCAATACTATTTCAGATCCTGCCAACCTGAAGATGGAAAATCAAACCAATGCAACTTTGTTGAGCGAAAAGCTTCCGCCTGAACCTTCACAAGAAGTCGACTGTGATCAAaggattaaaaacaattctCTTCCCAGATATAACACCTCCCTGACCGACACACAGCTCAGAAATATCCTGGACTACTGCACTCAAGCTGTAAATCAAACGGGTCACTCGCCTGTATTgatgcagaaaacaaatacgGCCCTTAGTGGAATCCACGCATCACAAGGCAATCCGGTGTCTTCAGAAAATGCTGCTGAAACGAGTCTGGATGGGAGTGGGAGCTCCCTATTCGACAGTCTCTGCGAAAATTTCCCAGATGCTGTCTTGGAGGAGGAAAGCTCGGAAGCATTGCCTGAGAGGTTAGAAGGCAGAAAGGAGGGTATTTCTTTTCCTCCTCAATCTGCAATGAAAGAACAACAACCTGTGAATCAAGAAGCAGTCCAATGGGGTGAATCTTCTTTCAATTTATCAGACTTTGGGGATTCTTTTCAGATACACGAAGCGCAGTACATCGAGAGACTGAATGCTTTAATTAGCAGTGATGATGAAATAACCTCGGGACAAACCAAACCACTAGAACCCATTCCCATGAATTGTAATAGACCTATATCTGATGTGAACGTGTCTAAATCTCCAGAATCTGAGACCCATTCCGAATCTAAGTCTTCAGAAGATATGTTATTAATTGCAAATAAGACTTGGTCAGACACGTCTTTCCACTTAAGCCCTGGCATGCAAGACGCTCTTGACCAATGGCCTAGCCTCTCGGGAAACTATGCAAGTAGACATGAGATCCCGGTAAATGCCAACCCAGAACAAAATGCTGCCTACAGTAGGTCTCCAGAACCAAGCAGACTGATCCCAGGACAGTGTTTAGCTGTTGCAGATCAGACAGCAATGAATACTGTTTCCCCATTTCTGGATCTTGAAGCAGAATCTAGACCTGCAAGCCATAATGAACTTATTCCTCCAACTCCAGAATCCACTGCAGTCACTCCTAGGATAAAAATGACCATGTCTTCTGTGAAGTCtgataaatgcaaaaacaaaagaaatatgTCTAACCGGAGCTCGTCACATGTTACAGAAGATAACCAGAAACATCCACATCCCAGTGTTAAAAGATTGCCTCTATCAGACTTGGATGACTCTCTGGTTGGTGAGGGTTTTTCACTGCAGTTGTCCCAGGACGCGTCAGCCTCCGCTTCAGTCCCTGGCAGCCCAGAAACGTTCACAATCATTGACGTGGCCAGTGATCTGACACTTTTCCAAACGTTCATCACAGAATGGAAAGCGAAGACAAGGTTTTCCATCGCTGTTGCCTcgcGCTCTAGTCGGAAAAAAACTTCCAGGGAAGACGGGTTTCCTATCAAATCAAACGAAGCTCTTGTCGTCACTGGTATAGCGGTATGCTGGGGTGGAAAGGATGCCTATTTCGTATCCCTGCAACGGGAACAGCCAATCACAGacATAAGTCCAAGTTTGGTTCCTCCACCTCTGGATCAGAACCTATCAGTGCAGGAGAGATTAAAACATGTGCATTCCTGTCTGAGAAGCAGCTCCTCTGGGTCTGAAAGAGTGAGTGTGGTGTACGACTTTAAACAGCAATACAAAGCTCTGCTGCTGTCCTGCGGACTCGCTTTGGAGAGCAGCTTTGAAGACCCAAAGaTCGCGTGCTGGTTGCTGGACCCTGGCTCTAAGGAGCGCACCCTCCATAATATGGTCACCAACTTCACACCACAGGAGTTGCCGTTGCTGGAGGGTGTTGGTGCGGGACAGGGTGTCCAGAGTTTGGGGCTCAGTGCTGACCGCGAGCACTCGGGTCGCTACAGAGCGGCCATCGAGTCTGTGCTCGTCTACGGCATCATGGACCACCTCGGTGTCCTCCTGAGGAAAGACCACTTGCAAGATGTGTTCTGCAACGTGGAGATGCCCATGCACTACTGCCTGGCGCTGCTTGAGTTGAACGGCGTCGGCTTCAGCGCTGCGGAGTGCGACTCGCAGAAGCACATCATGCAGGCGAAGCTGAGCACCCTGGAGGCACAGGCCTACCAGCTGGCAGGACACAGCTTCTCCCTGACCAGCGCCGAGGACGTGGCGGAGGTCTTGTTTCTGGAGCTGAAGCTGCCCCCTAATGGGGACGTGAACGGGCAGAAGAATAAGAAGACTCTGGGATATGCCAGGAGGCCTGGAGCAGGAACCCGGGGTAGAATAGACAAGCAGTTCAGCACCACCAAGGATGTTTTGGAGAAACTCAAACCTCTGCACCCTTTGCCCGGGGTGATTCTGGAGTGGAGGAGGATCACCAATGCCATGACAAAGGTGGTGTTTCCTCTCCAACGCGAGAAACGCCCGCACCTCCGGCTGGGTATGGAGAGGATATACCCCGTCTCACAGACGCACACGGCTACAGGAAGAGTGAGTTTCATAGAGCCCAATATCCAGAATGTGCCAAAGGATTTTGAGATCGAGATGCCAACTCTGGTGGGAGAGAGTCCCCCATCTCAGGAACGAGGCAAAACATTCTCTTCCAAATCAAGgAGATCAAAGATCCCtcgacagttggtgtcacaagCCAAAGCAGTCGGAGAGTCTCCAGGGAAAGGGATATCTTTTTCTGTTAGTATGAGGCATGCTTTTGTGCCATTCCCAGGAGGTCTCATCCTGGCTGCGGATTATTCCCAGTTGGAGCTACGGATTTTGGCGCACCTCTCCCGGGACCGACGGCTCATTCAGGTCCTCAACAGCGGGGCGGACGTCTTCAAGAGCATCGCGGCCGAGTGGAAGATGATCGAATCCGCGTCAATCTGCTATGGAATAATCTATGGCATGGGAGCAAAGTCACTGGGAGAACAGATGGGGATTGATGAGACCGATGCCGCCTGTTACATAGAAACGTTCAAATCTAGATACACAGGAATTCAGACCTTCCTGCGTGAGACTGTCAAGACCTGCGGAAAAAATGgatacattcaaacaatactGGGGAGGAAGAGGTTCCTTCCTGCTATCAAGGACCCGAACCTTCACATTAAAAATCATGCGGAGCGCCAGGCGGTGAACTCGACAGTCCAGGGTTCTGCTGCTGACATTGTGAAAACCGCGACAGTGAACATCCAGAGATGCCTAGAGGAGGCTTTCCCCACAGCGACCAAATCGCACGAGCACCCGGGGAGCCCAGAGTGTCCCAACCCATCAGaCAAAAGACGACAAAGGGCCGTCTCATGCCCGGGTCGGGGAGGGTTTTTTGTTCTTCAGCTGCACGATGAGCTCATTTATGAGGTTGCGGAGGATGATCTCATTCAGGTGGCTCAGATTGTGAAGAAGGAGATGGAATCTGCAGTTAAATTGTATGTGAAACTTCGGGTGAAGGTGAAAGTAGGCCCAAGCTGGGGAAACCTCCTAGACTTGGATATTTAGTTCATATTGTAAATGGGGAAACAAAACCGTGACAGATAGCTTAACTCCTTGgaacactatttaaaatgaaagtggcATCTGTAAAGAAAATGAGAATGTACTGACAGCAAATGAAACCTGTTTGGGTATTGCATTTGGCCATTTCATGACAAAACAGCTGCTTTCTGATAATATTATCACTACAAcagtaatgtattttctctttttttatatataaaatgtacagtaaatattttatttaaaaaaaattgaaatgaacttttgtaatac

Function

GO: NA

KEGG:

id description
K02349 POLQ; DNA polymerase theta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15762 lncRNA downstream 199373 15547050 ~ 15605487 (-) True G12743
TU15723 lncRNA downstream 387342 15417023 ~ 15417518 (-) True G12707
TU15717 lncRNA downstream 611219 15193202 ~ 15193641 (-) True G12702
TU15634 lncRNA downstream 1016442 14786993 ~ 14788418 (-) False AMCG00016293
TU15550 lncRNA downstream 1341037 14463617 ~ 14463823 (-) True G12595
TU15855 lncRNA upstream 645 15824911 ~ 15825237 (-) True G12807
TU15857 lncRNA upstream 4500 15828766 ~ 15829026 (-) True G12809
TU15858 lncRNA upstream 5089 15829355 ~ 15829567 (-) True G12810
TU15859 lncRNA upstream 10556 15834822 ~ 15835082 (-) True G12811
TU15860 lncRNA upstream 10928 15835194 ~ 15836468 (-) True G12812
AMCG00016317 mRNA downstream 46837 15742441 ~ 15758023 (-) True AMCG00016317
AMCG00016316 mRNA downstream 64514 15735096 ~ 15740346 (-) True AMCG00016316
AMCG00016309 mRNA downstream 180408 15621056 ~ 15624452 (-) True AMCG00016309
AMCG00016308 mRNA downstream 208060 15577433 ~ 15596800 (-) True AMCG00016308
AMCG00016310 mRNA downstream 240760 15556869 ~ 15564100 (-) True AMCG00016310
AMCG00016319 mRNA upstream 16993 15841259 ~ 15849112 (-) True AMCG00016319
AMCG00016321 mRNA upstream 65994 15890260 ~ 15902820 (-) True AMCG00016321
AMCG00016320 mRNA upstream 96831 15921097 ~ 16030468 (-) True AMCG00016320
AMCG00016318 mRNA upstream 232843 16057109 ~ 16061718 (-) True AMCG00016318
AMCG00016328 mRNA upstream 584089 16408355 ~ 16409278 (-) True AMCG00016328
TU15638 other downstream 1012891 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 2245676 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 2934300 12862099 ~ 12870560 (-) False AMCG00016226
TU16024 other upstream 1034275 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 1034275 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 1034275 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 3266973 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 4310931 20135197 ~ 20135547 (-) False AMCG00016453

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000006_06006532_06022059.mRNA True 9554 mRNA 0.42 30 CI01000006 6004802 ~ 6022182 (+)