RNA id: AMCG00016318


Basic Information

Item Value
RNA id AMCG00016318
length 1550
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00016318
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16057109 ~ 16061718 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAATTTTTGGGACTAATTTCCCCCTACCGCCAACTTTTAAAGttgaagaaagagaagaggCAGCCATGGATGTGAAGGAACGAAAGCCTTACAGGTCACTGACTGCGAGGCGGGATGCGGAGCGCCGGTACACCAGCTCCTCCGCCGACAGCGAGGAGAGCAAACTCCACCCCAAGTCCTACAGCTCCAGCGAGACACTCAAGGCCTTCGACCAGGACTCACGCCTGGCCTACGGGAACCGCGTCAAAGACATGGTGCACCAAGAGGCCGATGAGTTCTGCAGGCAAGGCGCCGACTTCTCGCTCAGAGACCTGGGCTTTGGCGAGGCTCCACCCAACCACGGGACGGGTTACCGCACGGACATAGGCCTGCCTCACCGCGGTTACTCCATCAGCGCCGGCTCCGACGCCGACACCGAGACGGACGGCATCATGTCTCCAGAACACGCCGTCAGGCTCTGGGGGCGGAACACCAAATCGGGGCGAAGTTCATGCCTGTCGAGCAGAGCCAACTCCAACCTGACGCTCACCGACACCGAGCACGAAAACACTGAGCACGGTGAGGGAGCTGCACTTTGACCTTGCCCTTCCTGTGGGTTGAGGAAGTAATTATCTTTCGTCTGGAATTTGGTGTACTTCTTGATGTGTGAAAAGCAAGTCTCCCCAGTGCaccatggttttgttttggcttcTCAAAGGTGACATGCTGCGTAAATCACCTGTTTTTTAGCTTTGAGCATTGGAACAGCAGTgggttttcattaattaaatgaactTTGTGGTATACTAtgtcttttatctttttttaaatatgctctGCAGTtgcttttgcaaaataataagCTCTGCTTTGGTTTGCTGTCATGGTCAGTATTAAGTTGGTTTATCTTTGCTTTATTGTTACTGTTGCTTTTAACCACTTCCTACCGTGGGTAAAAGGATGCAGATTAATTCTTCTAAAAGtcttatattgatttaatttaaatgctaattataaCTTACACtgtgtttgtattgattaagGTAATGTATACTTTGCAATTTTGTGTTATAAGaaatgttctataaaacattCCATCACCAaagaacataatacattttgatagtTGTAAAATGGaggctttaaatatataatatgtacaaTTATTCTAGTTCTCCTAAGAGAAGTAAGATTGGTGAAGCGTCCTTAGTCCAGTGTagtaaaaatgttatgtttctgactgtttctttaaataaggAAGAGcatcttgtgtattttatgtgaatataatttattaatgtttttttgtgctgcTTCATTTCATATCTACATGTGATGCCATGCCAACATATATGGATGTCTGTGTCATCCTAGTGTTACCAGGCAGCACTTACTGTGCGAGATATATCTCACACACTTTAGCATTTTTCAAAAATCTGCTTCTTAAAGCTTAAAACAAACCCTTCAATTTGATGGCATTGGCCATGCAGAAAGATACCTCTTATTCGGCCAAAggggtaaatatttaaatttctcAATTTATGGTTTCTTCCACATGAATAAAAGAAAt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15862 lncRNA downstream 216317 15837835 ~ 15840792 (-) True G12814
TU15860 lncRNA downstream 220641 15835194 ~ 15836468 (-) True G12812
TU15859 lncRNA downstream 222027 15834822 ~ 15835082 (-) True G12811
TU15858 lncRNA downstream 227542 15829355 ~ 15829567 (-) True G12810
TU15857 lncRNA downstream 228083 15828766 ~ 15829026 (-) True G12809
TU15890 lncRNA upstream 161767 16223485 ~ 16223728 (-) True G12838
TU15928 lncRNA upstream 405899 16467617 ~ 16467819 (-) True G12867
TU15929 lncRNA upstream 406255 16467973 ~ 16468272 (-) True G12868
TU15930 lncRNA upstream 408893 16470611 ~ 16470959 (-) False AMCG00016327
TU15965 lncRNA upstream 533960 16595678 ~ 16596220 (-) True G12894
AMCG00016320 mRNA downstream 26641 15921097 ~ 16030468 (-) True AMCG00016320
AMCG00016321 mRNA downstream 154289 15890260 ~ 15902820 (-) True AMCG00016321
AMCG00016319 mRNA downstream 207997 15841259 ~ 15849112 (-) True AMCG00016319
AMCG00016315 mRNA downstream 232843 15804860 ~ 15824266 (-) True AMCG00016315
AMCG00016317 mRNA downstream 299086 15742441 ~ 15758023 (-) True AMCG00016317
AMCG00016328 mRNA upstream 346637 16408355 ~ 16409278 (-) True AMCG00016328
AMCG00016326 mRNA upstream 358156 16419874 ~ 16425645 (-) True AMCG00016326
AMCG00016325 mRNA upstream 373774 16435492 ~ 16445488 (-) True AMCG00016325
AMCG00016327 mRNA upstream 408979 16470697 ~ 16475170 (-) True AMCG00016327
AMCG00016332 mRNA upstream 424743 16486461 ~ 16486880 (-) True AMCG00016332
TU15638 other downstream 1265140 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 2497925 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 3186549 12862099 ~ 12870560 (-) False AMCG00016226
TU16024 other upstream 796823 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 796823 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 796823 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 3029521 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 4073479 20135197 ~ 20135547 (-) False AMCG00016453

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000154_00378861_00412679.mRNA False 2016 mRNA 0.51 10 CI01000154 378861 ~ 412945 (+)