RNA id: TU15930



Basic Information


Item Value
RNA id TU15930
length 349
lncRNA type sense_over
GC content 0.43
exon number 1
gene id AMCG00016327
representative False

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16470611 ~ 16475170 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATCAAGTatgatttgaaaatacattcagGAATGAAATACACTCAAATATAAGACCCAAGTACAATGTGTCTTGTAAGTGCCAGGTTTAATCCAATGAATAATGAGCCTGCATTTGTTAGTTATCACAGCTATGTATGTGCTTAAGAGCTTTCCCTAGATTTCAGAGAATCACAATATGGAAGCAGCTCTGTACCATCCACAGGGAATTGAACACAATTAAACTCACGGCTGCTGCTTGTAGATTCTGCAGGCACTTATTGAGGTGCCCAATCTCTGCCCTGTAGTCATCCAGCTGGCATTCCAGCTTCTCTCTGCGCACTCTCTCATACTCGAGCTGGGCCTGAAGCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU15929 lncRNA downstream 2339 16467973 ~ 16468272 (-) True G12868
TU15928 lncRNA downstream 2792 16467617 ~ 16467819 (-) True G12867
TU15890 lncRNA downstream 246883 16223485 ~ 16223728 (-) True G12838
TU15862 lncRNA downstream 629819 15837835 ~ 15840792 (-) True G12814
TU15860 lncRNA downstream 634143 15835194 ~ 15836468 (-) True G12812
TU15965 lncRNA upstream 124719 16595678 ~ 16596220 (-) True G12894
TU15968 lncRNA upstream 137759 16608718 ~ 16608944 (-) True G12897
TU15973 lncRNA upstream 152724 16623683 ~ 16623906 (-) True G12902
TU15986 lncRNA upstream 278760 16749719 ~ 16749919 (-) True G12915
TU15992 lncRNA upstream 320464 16791423 ~ 16791669 (-) True G12921
AMCG00016325 mRNA downstream 25123 16435492 ~ 16445488 (-) True AMCG00016325
AMCG00016326 mRNA downstream 44966 16419874 ~ 16425645 (-) True AMCG00016326
AMCG00016328 mRNA downstream 61333 16408355 ~ 16409278 (-) True AMCG00016328
AMCG00016318 mRNA downstream 408893 16057109 ~ 16061718 (-) True AMCG00016318
AMCG00016320 mRNA downstream 440143 15921097 ~ 16030468 (-) True AMCG00016320
AMCG00016332 mRNA upstream 15502 16486461 ~ 16486880 (-) True AMCG00016332
AMCG00016331 mRNA upstream 33257 16504216 ~ 16508407 (-) True AMCG00016331
AMCG00016333 mRNA upstream 105650 16576609 ~ 16586666 (-) True AMCG00016333
AMCG00016335 mRNA upstream 116532 16587491 ~ 16752990 (-) True AMCG00016335
AMCG00016336 mRNA upstream 286456 16757415 ~ 16774872 (-) True AMCG00016336
TU15638 other downstream 1678642 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 2911427 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 3600051 12862099 ~ 12870560 (-) False AMCG00016226
TU16024 other upstream 387582 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 387582 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 387582 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 2620280 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 3664238 20135197 ~ 20135547 (-) False AMCG00016453

Expression Profile