RNA id: AMCG00016342


Basic Information

Item Value
RNA id AMCG00016342
length 1142
RNA type mRNA
GC content 0.41
exon number 8
gene id AMCG00016342
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16876272 ~ 16880591 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTCTCGCATAGAAAGCTCTGAAAGAAAGCGGAACGCAAGTGTCTGTGTCCGCGTTTCTTGCACGACGCTTATCGAGGCGGACCgagtttctttttgttattcaaTTCTGTGGATTGTATTAAATAGtggttatttttgtatttattaagtgGATGTTGGTATTAAAATAATCGCCATAATATCGAACAATGAATCCCCTCTTCTCTAAGCTGGGTTTCTCTGTAAATCATGCAAAGGTGTTCAATCAGGTTGTCTCCGTATTTAGGTTAGCAGTTGCAAATCAGCACCCACTTTTAGGCAGTGTTTTACAGAGCAATGAGAGACAATACCGGTCCATGCCAACTCATGGGATTGGCAGGTATAAATATCTGCTGCCAAAGCAATTGCccaagaagaaaaggaaggacAAGATGCAGATTAAGCAGATTAATCCAGGGACAGAAACAGTGTATGGTACCCTCAATGTGTTAGTGTCTGGCTACGACATGACTTTAGTGGAGCACTACTCCCAGTATGTCCACAACCTCTGTAATCGGCTCAAGATAAAGGTGGACGAGAGCTATGCATTGCCCACCAAGACCACAGAACTGATTCTCGTGCAAGAACAAGGCACCAAGATACATGTGGATTCTGTTCTCAAGACACACAAGAGAGTTGTGCAAGTCAGCGATTTGAGTTCCACTCTGGCCCCAGTGTTTTTGGAGGTCCTTCTAAGAAATCAACCAGAGGGAGTAGAGCTCTTAGTCAAAGAGCACACAGAGGAACAGTTCCAGGCCCGGCTCAAACGTCGCCCAGAACTCGAAGGGTTAATTGCAAAAATTAGCTGAGAATGACCCTCACCTCTATCAGCCAGCCTCCCCTACACTCTGGCTGGTCAAAGGTCACCATAATAGGCTGACCTTTATTCAGCCTTAGAAGAAGTGGTCTATAAAATCAATGTATGAGCTCCtctgatctgtgtttttttttttaatgacaattaGATGTGCACTGAAATAAACATCGGCTTTAATATTGAGCTGCTTgttgtcatgaataataaaaatgctttcCAAATGAGATGCAAACTTgatctttgttttcattaacaGATAGTCAAAGTTAATAGATTTAattagctaaaaaaaaaaaaaaggaaac

Function

GO: NA

KEGG:

id description
K17429 MRPL48; large subunit ribosomal protein L48

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16051 lncRNA downstream 7945 16866319 ~ 16868327 (-) False AMCG00016345
TU15992 lncRNA downstream 84603 16791423 ~ 16791669 (-) True G12921
TU15986 lncRNA downstream 126353 16749719 ~ 16749919 (-) True G12915
TU15973 lncRNA downstream 252366 16623683 ~ 16623906 (-) True G12902
TU15968 lncRNA downstream 267328 16608718 ~ 16608944 (-) True G12897
TU16072 lncRNA upstream 37975 16918566 ~ 16924672 (-) True G12978
TU16151 lncRNA upstream 361353 17241944 ~ 17246330 (-) True G13045
TU16154 lncRNA upstream 361353 17241944 ~ 17246330 (-) False G13045
TU16156 lncRNA upstream 361353 17241944 ~ 17246330 (-) False G13045
TU16168 lncRNA upstream 383010 17263601 ~ 17266135 (-) False AMCG00016360
AMCG00016345 mRNA downstream 6270 16866318 ~ 16870002 (-) True AMCG00016345
AMCG00016343 mRNA downstream 11880 16861180 ~ 16864392 (-) True AMCG00016343
AMCG00016344 mRNA downstream 53902 16811036 ~ 16822370 (-) True AMCG00016344
AMCG00016336 mRNA downstream 101400 16757415 ~ 16774872 (-) True AMCG00016336
AMCG00016335 mRNA downstream 123282 16587491 ~ 16752990 (-) True AMCG00016335
AMCG00016348 mRNA upstream 48837 16929428 ~ 16938560 (-) True AMCG00016348
AMCG00016350 mRNA upstream 129140 17009731 ~ 17023094 (-) True AMCG00016350
AMCG00016351 mRNA upstream 159714 17040305 ~ 17071447 (-) True AMCG00016351
AMCG00016353 mRNA upstream 223383 17103974 ~ 17117735 (-) True AMCG00016353
AMCG00016352 mRNA upstream 242115 17122706 ~ 17123239 (-) True AMCG00016352
TU16024 other downstream 15093 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 15093 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 15093 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 2084303 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 3317088 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 2210648 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 3254606 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 6574501 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 6818558 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 7430446 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile