RNA id: AMCG00016350


Basic Information

Item Value
RNA id AMCG00016350
length 3392
RNA type mRNA
GC content 0.48
exon number 13
gene id AMCG00016350
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17009731 ~ 17023094 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGTTTTCCAGATCATATGGTCATAGAAGATCATCTTGAAGATGACGAGGAGCCACCTCTGCTgttcccctctccttctccttacAGGAGGCTGCTGACAGTGCTGTCTCAGTCTCTTCTCCCGGCCCTGGACGTCCAGATGCTGAGTTGGCGGGGAGCGCTGACACTGCAGTGTGGGAAAGGAGAGCTCCTGAACAGCCAAGGGTTGTGTGTTCCCTGTCCGGCCTGCCCCCAGGGAGAGGAGCCCGGCGAGGCTTGCGGATCTGGGGAGGGCGTGGGAGTGACCTGCAGAGACTGTCCCGCCGGCACCTTCTCGGACAGCCTGGACACAGAGCCCTGCAGACCCCACCGCCAGTGTGACGCTCTGAATCGCTCGCTCTTCAGCCCCGGGACATCCAAGACGGATGCAGCCTGTGGAGAGTGCTTGTCTGGGTTCTACTCCAGTGAGGGGTCTTTGGCTGCCAGCCCCTGTTTGAGCTGCAAGTCCACCCCCAAAGGAACTGCTGGCTGTGAAGGATTCTCCAAGCCCACAGAGCGGGTGCTGAGGAGTGCTGTGAAGAAATCCCAGCCCAACATCACCAGCGCGCTGAACCCCGAGGAGAAGTCCACGGAGTATGCCGTGTTTGCCCTGGTGCCCATCTTCTGTGTGATGGGACTGCTGGGCATCCTCATCTGCAACATCCTCAAGAAGAAGGGCTACCAGTGCATGGCGGACAAGGATGGCAAAGATGAAGAAGCTCCAGCACCAGAGAAGGACGTGAATGCTTTCCCATACATTGTGGATGATGGCAATGAAGACACCATCAGTGTGCTGGTTCGGCTCATAACGGAGAAAAAAGAAAACGCTGCTGCTTTAGAAGAACTGCTGAAGGAATATGAGAGCAAGCAGATGTCCATCAGTAAAGCCACTTCAGTCAAGTTTCCTCATCTCCCCCACCTGCCCCTGCTGAGGTCCCTGCCCCGCCTGTGTCCACACCAGCATCATCTGCACACCATTAACGGCCTGGCCCCGCGCTCGGGCAACTGCTGCTCACGCTGCAGCCAGAAGAAATGGCCTGAGATCCTCATGCCCAAGGACACCAGCAAGACCACCAAAGTGGGAACGAAAAGCAGCCGGCCTGGAGAGATCACCATCCTCTCAGTGGGCAGGTTCCAGGTGGCCCAGATCCCCGAGCTGAAGTCCACTCCCCTGACAGAGCTCAACGCCGTGGAGCTGAGCGACACCGACTCCATCGACACCACGCACACCGAGCCCGCGGACCAGAAGTCCCTGCTGGGTGGCTCGTCCTCGGCCCGGCCCAAGAGCAAGTGGCTGAAGCCCGGGGACAGCAAGCTCGAGCCCGGGAGCTTGAGCCTTCAGCTGGGGCGCAGCTCAGCTTTCATACTACTGGGGCTTGGGCTTTCGGTTTTTCTTCTGTGCTTGGGGAGGTGTAAAGGCAGGCCGGCTGTGGGTGCGGCAGTGACTGGGCCACTGGAAAGACCCACAGGGGTGGGTGCAGGTGAGCAGCTAATGGAAGCAGCACTTGAACACGTGCAGATCTGCGCCTCGCTGCCAAAGACCGGGGAGCTGCAgtgtggaggagggggggcaggAAGGCACGCCGTGAGGACCATACTGGACTCTGTGTAGGAGGGGGCTGAGCAGCAGCCTGCCGCCAcagtacattgttttaattatcatttgAGTAGACTACATTTCTAACCATGAAGCAAAAGCTAAGGAACAAACTGTTCTTCCGTGGTTGTGCTTCCTCATCACTTCACGACAAGGCACTGTATCGACAGGAGCTTTCTCTAGTTCATAGTGGTCTACACTGTGTAGGAAATACACTACACGCAGATCTTGCATGCTTGCCAGACCTGGTactaaaacataattgaaacaaTGTTCAAGACTGAGATCTATAACAGAGTTTAAGAAAAGCGTTGTAGAACAAATTGGGGGGGAGGAGACAAGTATCTTCATTTAATACTTTCTTTTGACTGAATTCAGGCTCTAACCAGGTTTGTGGATCATTCTGAATCTAATTGCACCTTGTagactaaaatgttttaataattagaGATCAAGTGAAGAATGTGGTGATAGAGTAAAGGATTAAATCTTAAACCTACAAATAATCATGAAGGCCAGCTGAGAGGAACCACTCCCGCTGCTCTGAGAGTTAAAATCGCTATTCAGGTCTGGACTCGGGCATTTAGAAGGCAGGGTGACCTCCATGCCCAAGACTGAGGTTAAACTTTTTTACACGGCTTCAGACAGCTGTGCTATATGCATCTGCAaaccaaatgtaaatatttattttgcacatccTATCCAGAGATACAAAAGGTGGAATTTAAATCTTTCCACTGCATCAAAAACACTATTACTATCCAAGATTTTGTGAGCACTAGTTTTgcccaagttTGCTAAGATTGGTCTTTTGCGATTGGAAATGCTGTGATTTTACCCCAGTCCTTAATTAACATCTTGCTGTTACACATGTACTGTTTACTGGTTTCCATTCCCCCTGAGCTCTCAAGTTGTTTACCATTGAATTAGTccataaaaaactgaaatgttaaagGTACAGTATTTGAAAACAAGTGCACTTGTAAATCTTCAACAGTAAAAGAACtggggaggaaaaataaaacttaagtATTTCTAGATTAATTATGGGAGATTTTAagttaaaacttaaaactaaacCCAAGACAATGGCCTGTAGTCACTATACTTTTGATTCATTACATCCAGTGCAGCCTGCAAAGTTTTTTCATCCCCAAACCTACCACCATGCTAGCTGACAGATACGATGCATATTCAGATGTAGGGTTCATAACAAGAACAGAAAACTATTGTTGATGCCACTTGTCTTTATAATAACCACCCTCTCAGTACATACCTGCGGTTGGAATGGAGCTTTCTATTTAACCACAAACCAGGAGAGACATGTCAAGTAACGTCTTGCACGCTGTTACCTGGCGGAGCCGTCAGGATGCACACTGCAGTATTCGGACGTTTTCTtgcttcacacacacaagaccCATTTCCTGGCACACGAGTTTCTTTCACTTCAGCGGGTTTTACTGGAATTGGAAACGTACAGTAAAAGTGTCCTATTGTTATCGACATCCGGTCttgtctcctctgttcctgTCAGGCACAGTCCCTACCTTGGATGTTTCTTAGGATTTACTTTAAAGGAGTAGAAAGCCACTTcattgtttagtttgttttttgttaaaagtttacatttaaaattttgTATGGTTTAAATGCTACTTTTGtaaatttgtttctgtattgtttttgtatttattgattggacattttttgtttttaatctgttaaatattaactgaaatgtCTATGATTAAAACCTCATCTCTCCAACCTTGTAGG

Function

GO: NA

KEGG:

id description
K05156 TNFRSF19L, RELT; tumor necrosis factor receptor superfamily member 19-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16072 lncRNA downstream 85059 16918566 ~ 16924672 (-) True G12978
TU16051 lncRNA downstream 141404 16866319 ~ 16868327 (-) False AMCG00016345
TU15992 lncRNA downstream 218062 16791423 ~ 16791669 (-) True G12921
TU15986 lncRNA downstream 259812 16749719 ~ 16749919 (-) True G12915
TU15973 lncRNA downstream 385825 16623683 ~ 16623906 (-) True G12902
TU16151 lncRNA upstream 218850 17241944 ~ 17246330 (-) True G13045
TU16154 lncRNA upstream 218850 17241944 ~ 17246330 (-) False G13045
TU16156 lncRNA upstream 218850 17241944 ~ 17246330 (-) False G13045
TU16168 lncRNA upstream 240507 17263601 ~ 17266135 (-) False AMCG00016360
TU16181 lncRNA upstream 261309 17284403 ~ 17286829 (-) True G13065
AMCG00016348 mRNA downstream 71171 16929428 ~ 16938560 (-) True AMCG00016348
AMCG00016342 mRNA downstream 129140 16876272 ~ 16880591 (-) True AMCG00016342
AMCG00016345 mRNA downstream 139729 16866318 ~ 16870002 (-) True AMCG00016345
AMCG00016343 mRNA downstream 145339 16861180 ~ 16864392 (-) True AMCG00016343
AMCG00016344 mRNA downstream 187361 16811036 ~ 16822370 (-) True AMCG00016344
AMCG00016351 mRNA upstream 17211 17040305 ~ 17071447 (-) True AMCG00016351
AMCG00016353 mRNA upstream 80880 17103974 ~ 17117735 (-) True AMCG00016353
AMCG00016352 mRNA upstream 99612 17122706 ~ 17123239 (-) True AMCG00016352
AMCG00016354 mRNA upstream 122899 17145993 ~ 17146985 (-) True AMCG00016354
AMCG00016360 mRNA upstream 240526 17263620 ~ 17266747 (-) True AMCG00016360
TU16024 other downstream 148552 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 148552 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 148552 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 2217762 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 3450547 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 2068145 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 3112103 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 6431998 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 6676055 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 7287943 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile