RNA id: AMCG00016352


Basic Information

Item Value
RNA id AMCG00016352
length 534
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00016352
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17122706 ~ 17123239 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATTGTCTTCACCCTCTGCGCGCCCACGTTTGAGTTTGCCACCACGGGGACCCAGCGCAACAGGACGGTGTGCTACGACCTCAGCGAGCCGGCCCGCTCTGCCCACTACTTCCCCTACGGCATGGCCCTGACCTTCATCGGCTTCGTCATCCCCTTCCTGGCCATCATCATGTGCTACTGCTGCATGACGAGGATCCTGTGCCAGACGAGCGGCATGCACAGCCTGGTGGTGCGCGAGAAGAAGGACAAGGCCATCCGCATGATCATCATCGTGGTGGTGGTGTTTGCCATCAGCTTCTTCCCCTTCCACCTGACCAAGACCATGTACCTGATCATCCGGGCGGTAAAAGGCGTGGCCTGCGACGTGCGGGAGCGCTACTCCATCATCTACAAGTGCACACGGCCCTTCGCCAGCATGAACAGCGTCCTGGACCCCATCCTCTTCTACTTCACTCAGAAGAAGTTCCGGCAGAGCACCAAACTGCTCATGGACAAGATCAGCACCAAACGGGAGAAACTCTCGGCCAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16072 lncRNA downstream 198034 16918566 ~ 16924672 (-) True G12978
TU16051 lncRNA downstream 254379 16866319 ~ 16868327 (-) False AMCG00016345
TU15992 lncRNA downstream 331037 16791423 ~ 16791669 (-) True G12921
TU15986 lncRNA downstream 372787 16749719 ~ 16749919 (-) True G12915
TU15973 lncRNA downstream 498800 16623683 ~ 16623906 (-) True G12902
TU16151 lncRNA upstream 118705 17241944 ~ 17246330 (-) True G13045
TU16154 lncRNA upstream 118705 17241944 ~ 17246330 (-) False G13045
TU16156 lncRNA upstream 118705 17241944 ~ 17246330 (-) False G13045
TU16168 lncRNA upstream 140362 17263601 ~ 17266135 (-) False AMCG00016360
TU16181 lncRNA upstream 161164 17284403 ~ 17286829 (-) True G13065
AMCG00016353 mRNA downstream 4971 17103974 ~ 17117735 (-) True AMCG00016353
AMCG00016351 mRNA downstream 51259 17040305 ~ 17071447 (-) True AMCG00016351
AMCG00016350 mRNA downstream 99612 17009731 ~ 17023094 (-) True AMCG00016350
AMCG00016348 mRNA downstream 184146 16929428 ~ 16938560 (-) True AMCG00016348
AMCG00016342 mRNA downstream 242115 16876272 ~ 16880591 (-) True AMCG00016342
AMCG00016354 mRNA upstream 22754 17145993 ~ 17146985 (-) True AMCG00016354
AMCG00016360 mRNA upstream 140381 17263620 ~ 17266747 (-) True AMCG00016360
AMCG00016361 mRNA upstream 169849 17293088 ~ 17294875 (-) True AMCG00016361
AMCG00016368 mRNA upstream 257192 17380431 ~ 17413600 (-) True AMCG00016368
AMCG00016367 mRNA upstream 304265 17427504 ~ 17460486 (-) True AMCG00016367
TU16024 other downstream 261527 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 261527 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 261527 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 2330737 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 3563522 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 1968000 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 3011958 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 6331853 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 6575910 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 7187798 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile