RNA id: TU16168


Basic Information

Item Value
RNA id TU16168
length 1255
lncRNA type sense_over
GC content 0.31
exon number 4
gene id AMCG00016360
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17263601 ~ 17266747 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGCAGGCCGAGCCGCCACTGGCCCAGAGGTCTTTGCGCGGAAAGTTAAATCACTAATGTAAACAAGTGGATGCTGGATGGAGTTGATTTCAAATAGTGACGGTCGGTGTTGAATTCGCTGGTGGCCATAAATCACACCGAAAAAGTAGAAACTGGCTCatgttaatggacaccaatgTAATGTGCTGTGAAAGGTGTCCTTCTTGCTGTAGAGGTATAGTCCCATCGATGTCCTATGCTCTGCTAAATATGActtgatgtttttaaatgtgcagatatatgtatgtgcagggaatacaaacaaaaggaaatgttaACGTCGTAGTTCATGAACGTGTTTTTGTTGAGGGTGTCCACCACAGAGACCCTGTAATTGAAATTCATAGATTTCAGACCCTGTTCTGTTATAAAGTAAATATTCAATCCGAGCTTTCCTGTTCCTcctaccattttttttttttactgaacttTTTGCGTCAATATTTTATTAGCTTTATCCTTTTAAATTTGCGTATCAAGTTTTCGTTTACACATAATGGCTGGAGGGGCGGCGCTAGGGCGGGCAGCCGTGCGATTGGAGCGGGCAGCCGGGCGCTCGTCCCTGGAGGTGGGTGTGCGCACAGACGGGCTGTTTCTTCCCAAAGAGGGTGAACGACGGCCATCGTGCCTTGTTGGGTTAGTGCCAGTTTGCCTCCATGTCCTCTCCAGAGATTGCATCTTTATCATGGGGTCACATGAAGGTGAAAGGATGCTCCACCTCCTACAAGGACTGTAAAGTGTGGCCAGGGGGGAGTCGTGCCTGGGACTGGAGAGAAACTGGCACTGATCACCATCCTGGAGTCCAGCCTGCTGATCTGGAGGAGGTCTTGAAGAAGGGGGTGAATACACTGGTGATTGGACGGGGCATGAGCGAGGCGTTGCAGGTGCCGTCCTCCACGCTGGATTACATACAGAAGCAGGGAGTGGACGTGAAGGTGTTTCAGACAGAGAAGGCTGTCCGAGAGTACAACACCCTGGCCGGGCAGGGAGTCAAGGTGGGAGGGGTCTTCCACTCAACCTGCTGAAGTGGCGAGATCTAAATGTCAGACAGGTCGCTGCCAAGAGCTCTTGAAGAAGGCCTGTTTCTGTGGTGTGTTACTCTGCATGGATAGAGCAGTGATCTGTATGAATGAAACTTTAATCTAAAAAGTAAGACTTCCAGCtattggtctttttttttgtttgagttgtaaaaataaataaatacatctttaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16151 lncRNA downstream 17271 17241944 ~ 17246330 (-) True G13045
TU16154 lncRNA downstream 17271 17241944 ~ 17246330 (-) False G13045
TU16156 lncRNA downstream 17271 17241944 ~ 17246330 (-) False G13045
TU16072 lncRNA downstream 338929 16918566 ~ 16924672 (-) True G12978
TU16051 lncRNA downstream 395274 16866319 ~ 16868327 (-) False AMCG00016345
TU16181 lncRNA upstream 18268 17284403 ~ 17286829 (-) True G13065
TU16213 lncRNA upstream 109131 17375266 ~ 17377539 (-) True G13091
TU16261 lncRNA upstream 227720 17493855 ~ 17494346 (-) True G13126
TU16264 lncRNA upstream 229788 17495923 ~ 17496347 (-) True G13129
TU16302 lncRNA upstream 271899 17538034 ~ 17540345 (-) False AMCG00016376
AMCG00016354 mRNA downstream 116616 17145993 ~ 17146985 (-) True AMCG00016354
AMCG00016352 mRNA downstream 140362 17122706 ~ 17123239 (-) True AMCG00016352
AMCG00016353 mRNA downstream 145866 17103974 ~ 17117735 (-) True AMCG00016353
AMCG00016351 mRNA downstream 192154 17040305 ~ 17071447 (-) True AMCG00016351
AMCG00016350 mRNA downstream 240507 17009731 ~ 17023094 (-) True AMCG00016350
AMCG00016361 mRNA upstream 26953 17293088 ~ 17294875 (-) True AMCG00016361
AMCG00016368 mRNA upstream 114296 17380431 ~ 17413600 (-) True AMCG00016368
AMCG00016367 mRNA upstream 161369 17427504 ~ 17460486 (-) True AMCG00016367
AMCG00016369 mRNA upstream 200548 17466683 ~ 17472931 (-) True AMCG00016369
AMCG00016375 mRNA upstream 209283 17475418 ~ 17490419 (-) True AMCG00016375
TU16024 other downstream 402422 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 402422 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 402422 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 2471632 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 3704417 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 1825104 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 2869062 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 6188957 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 6433014 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 7044902 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile