RNA id: AMCG00016367


Basic Information

Item Value
RNA id AMCG00016367
length 4750
RNA type mRNA
GC content 0.45
exon number 13
gene id AMCG00016367
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17427504 ~ 17460486 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGTGTGCGGGTGGAAATGTGCAAACGGAGGCGCAGGGCAGACAGGGAGGCAGAGCCGCTGCGGGACCCACACCGCCCTGCACCCCGGGGAGCCGGCAGAGACGTCAGCGCGGGAGAGGGACCCTGCTCAGTGAAGGCCTACGAGAACCAGCACTACACCTCGCTGAAGAAACAGTGCCAGAGCAGTGGGACGCTGTTTGAGGACCCCCTCTTCCCCCCTGTGGACGAGTCTCTTTTCTACCAGGGCAACCGAATCGGCAGGGTGCACTGGAAACGACCCAAGgagCTGTGTGCTGACCctcatttgtttgttcatgGGATTAGTGCCCATGACTTGCACCAGGGACAGCTGGGAAACTGCTGGTTTGTGGCAGCCTGCTCCAGTCTAGCCTCCCGGGAATCTCTATGGCAGAAAGTCATTCCAGACTGGAAGGAGCAGGAATGGGACGTGGAGAAATCCAATTCCTACGCTGGGATCTTCCACTTCAGATTCTGGCGTTTCGGAGATTGGGTGGACGTAGTGATTGACGACAGGCTCCCAACCATCAACAACCAGCTGGTGTACTGCCACTCGAACGACAGCAATGAATTCTGGACTCTGGATGGTGGGAACACGGCGGACGCACTTGTGGACTTCACCGGCGGGGTGTCTGAGCCCGTGGACCTGGTGGAGTGCCAGTTCGCCCGGGATGAGGCATCGAGGAACCAGCTGTTCGATAGGGTGCTCAAAGTACACAACCGGGATGGGCTGATCAGCTGCTCGATCAGGGCGGCGAGCTCGGCAGACATGGAGGCGAGGCTGGACTGTGGGCTGGTCAAGGGCCATGCCTACGCCGTCACCGACGTCCGTAAGGTCAGGCTGGGCCACGGCCTGCTGGCGTTCTTCAAGGCGGAGAAGCTCTGCATGATCCGCATGAGGAACCCCTGGGGAGAGAAGGAGTGGAACGGGCCGTGGAGTGACAGCTCTGAAGAATGGCAAAAGGTGAGCAAGAGCGAAAGAGAGAAGATGGGGGTGACAGTGCAGGATGACGGAGAGTTCTGGATGTTGTTTGAAGATTTCTGCAAGCATTTCACCGACTTAATTCTGTGTCGCCTCATCAACACCTCCTACCTGAGCATCCACAAGACCTGGGAGGAGGAAGTGATGCGCGGGTCCTGGGTGCGGCATGACGACCCGCTCAGGAACCTGGCAGGGGGCTGCATCAACCACAAAGCCACCTTCCTGCAGAACCCCCAGTATGTGTTTGATGTGAGGAAGCCCGAGGACGAGGTGCTCATTTGCCTGCAACAAAAGGACCGCCGCGCTCGGCCCAAAGAGGGGAAAGGAGAGAACCTGGCCATCGGCTTCGACATCCAGAGGGTGGAGCTGAACCGGAAGTACCGCATGCACTCGACCCAGCAGAAAGTGGCGGGATCCATCTACATCAACTCGCGCTGCGTGTTCCTGAAGACGGAGCTGAAGGAGGGCCGCTACGTCATCATCCCCACCACCTTCGACCCCGGCCTCCAGGGAGAATTCCTGCTCCGGGTCTTCACAGACGTCCCTGCAGAGTGCAAGGAGCTGACTCTGAACGAGCCCCCACAGACCTGCTGGACTGGCATGTGTGGATACCCCCAGCTGGTCACTCAGGTGCACGTGGTCAGCGCAGAGGGCCTGCAGGGCCAGGGTGCCGACGGAGCTTCTGATCCCTATGTTGTGATAAGCTGTGATGGGGAGAAGGTCCGGTCTGCAGTGCACAAGGATAAGCGCAACCCGGAGTTCGACATCAAAGGGCTTTTCTACAGGAAAAAGACGAGGGAAGGCATTCATATAGAGATCTACAACAAGAATGTGATCTGTGACTCGTTCCTCGGCCAGGTGATCCTCACCAGCGACCCCAACGacctccagcagcagcacacgGTGCACCTGCGCGACCGAGGCAACCGGCAGAGCAACGACCTGCCCGGCACAGTGACCGTGAGGATCATCACTAGCAACGTGCTGACCAACATCTGAGCCAGCAGCGCCTTACCCCAGTGCCCAGACGCACAGTTCAAGGCTGTTCTGCCTCCCATGCAGTGAGACTAAGCCTATGTTTCTCAAAGtgaaagcaaatatatatagatacacatgtATACGTAAGTGTTTACAAGGGCTATGCATCATGGTGAGGGAGCATTCACGTCTGTTTTGACCAACTGCCTGTGGCTAGCAGGCTATCATTATCGTTCAGGAAGAACAGAGTATATCTGGAATGTATTTAATGTCAACCCTCCCGACCCCGACACTGAGAGCTGGCTGGCCCACATTAGGGGTCTTTAcatttctcctcttctctctaCTCGTtgttccttttttccttctgaaaagctcattcagttttttcttttgttgttgttattgcttAATTCTTGTCTCTCAAACGTTGGGTGTAGTCTTTTAAGAAACGTCTTTTAAAAGTTCTTTGAGAGAACTAAACGCTGACAACagtgaattaatattttttcagagtGTCTTTTACActtcttatattttgttatactactaagtttgtttgatttttctgtgtatatttatCATCAAGAAGTGCTTTATGGGACCAAAGAAAGCCATACAATGTTATCTACCATGCGCCATATTTGCCATcagttattgtttcttttttaatgtcatttgcCTGAGATGGTGAAAGTGAAGCCTCAATCACAGCAAACTGAATGAGGAAATGCTTTGGAACTGCACAATGCTAGACAGCAAAGTGATGCTGCTTAAATTATCTCCCTTGTTTTAATATACGCCAAACTGCGTAGCTGAAGACCGTAGATAACTGCAGTTTTGCTTGTACTTTTCTACTTTTCAGACGCTTAATTACAAGCTGTGTGTTATTAAGGGGAAAATGAAGAGGATGCATATATACTTGACTTGAGTACCTTTTGGAAtgttatttcaaatattaacaTTAGTTTTATATAAATTCCTTTGAGATAAACAGTGCTTCCAAAATTAAGGTCATATTTTTCTCAAATGTTGTAACTCAAGTAAGGTCAGTATTGCATGGTACCCTTATGCAGCGTGGGAGAACATGCACAAAAAAGTTACTCATCTCAGAATTGATGTTTGCCCCAATGTTCCTCATTCAGTGTTTGTTGTGATTGAGCTTTGTCTGAGGTTTAAGGCCTTCTGGCCCACTGTGTTGTGGTCGTAGTGGGAGCTGGATGCACAATATACCTCACTTGACTGTTTTAGAATCAGCAGTGGGAAATATTTGGGTTAGTCTGGGTACAGGCACATGTAATCTCAATATATGTCCTTTCTGATAAACCAATGCTTTGGCCAAAACCAAATCTTAGGTGCCATAGTGGACAGTGTGTGcaactaaaattaaatctttaaaatacacaacttTGTATTCAATATGGATAGCGTAATGTCCCATTTAATAGTCTTACATTCAgtcaaatattaatttcataaatgtttatatattttatcatcaTTTATAATGGTTGggttttcataatgttttttcagttttccttcattaaagtgcaataagtGCTATGTTTAAAGTAGAAGCTTTTCTAACTTGGCTGAGAGAATATTTGACAATCCATTTTGACTTATCAAACCACTTTTTAAAGGCAGATATGTAGTTTTTTGAGAAAAGTGAGTTATTCTAGTTCTCATTGATGTTATATTATTTGCTcgtgttcattttattgttttcagtaaaaGTGTAGTCAAGGCCCATTGAGCAAAATCCCTGTCGGCTTCGAACATGGTGCTGCCATTTTATACCCTGGCACATCGAGGACTTTGCTCAAATTTATTTGTACCCGATAAgtaaatcaatatgaaaatagTTGTCATAAAAGGTGGAAAAAAGCTTTTCGGAGTGAGTATTGCTAAAATGTCTAACGTTTAGTAGAACTTCAGTATCATTCAAGaaggcagtgagagagagagagagagagcgtcaTTCAAATGACTGAGTTAGATTTTTGTTGCCTtggttgtatatttttgtatatcagttttttttcattgttaagaATATTGCCAAATATTGCTTTGTTATATTGTGTGTACTTCTTGGAGCATCTTTGCACTTCTCAGAAAATTCAACTATAGTACAAAACTCTAAAACTCTACTTGTTATTGGCTTTCTAATCATTCATTTGCCATGTTTACTTGTACATGAAtacttaaaatttaaaattaataataatttacatggACTACAGACATCGGAGCTGCTCTGTCACAGTAATGATACACATCTTATGATCATAATCCTTTGTAAACTAATTTTAACAGGAATTAAACAAACCACTTACTGAGGGAGAACCAGTAAGTACTCTCTTGTAGTTTGGCATAATCTTTGACTTGAAACTTGCAAATGTAATGCATGATAACACTCTATACCTGACAACTATAGCGTTTGTATGACTATTTTCTAATCaatattttgtacttttctGTTAAATCTTTTATATTTCCGTGTTGAATCCTGGGTTCAAAGCAAATCTGTTTACTGTTGTTACAAagctgaaattattattttgtgtttaatgtttttttcttttctttttagttttattccttttttttctcttgatgAATCCCTGCCAGGGTGCCAACTGTGgttattttgtaacaatttttttttttttttttttttgtattttatgtcaaCTTGTGGcatgaatttgaaataaaacttAAGATCTTTTAAGGGATTTCCTTTgagactttattatttattt

Function

GO: NA

KEGG:

id description
K08574 CAPN5; calpain-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16213 lncRNA downstream 49965 17375266 ~ 17377539 (-) True G13091
TU16181 lncRNA downstream 140675 17284403 ~ 17286829 (-) True G13065
TU16168 lncRNA downstream 161369 17263601 ~ 17266135 (-) False AMCG00016360
TU16154 lncRNA downstream 181174 17241944 ~ 17246330 (-) False G13045
TU16261 lncRNA upstream 33369 17493855 ~ 17494346 (-) True G13126
TU16264 lncRNA upstream 35437 17495923 ~ 17496347 (-) True G13129
TU16302 lncRNA upstream 77548 17538034 ~ 17540345 (-) False AMCG00016376
TU16425 lncRNA upstream 702301 18162787 ~ 18165770 (-) True G13254
TU16520 lncRNA upstream 1365708 18826194 ~ 18901976 (-) True G13334
AMCG00016368 mRNA downstream 13904 17380431 ~ 17413600 (-) True AMCG00016368
AMCG00016361 mRNA downstream 132629 17293088 ~ 17294875 (-) True AMCG00016361
AMCG00016360 mRNA downstream 160757 17263620 ~ 17266747 (-) True AMCG00016360
AMCG00016354 mRNA downstream 280519 17145993 ~ 17146985 (-) True AMCG00016354
AMCG00016352 mRNA downstream 304265 17122706 ~ 17123239 (-) True AMCG00016352
AMCG00016369 mRNA upstream 6197 17466683 ~ 17472931 (-) True AMCG00016369
AMCG00016375 mRNA upstream 14932 17475418 ~ 17490419 (-) True AMCG00016375
AMCG00016374 mRNA upstream 43394 17503880 ~ 17506443 (-) True AMCG00016374
AMCG00016376 mRNA upstream 77552 17538038 ~ 17541342 (-) True AMCG00016376
AMCG00016381 mRNA upstream 217644 17678130 ~ 17686737 (-) True AMCG00016381
TU16024 other downstream 566325 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 566325 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 566325 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 2635535 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 3868320 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 1630753 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 2674711 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 5994606 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 6238663 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 6850551 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_12266910_12288366.mRNA True 2526 mRNA 0.52 15 CI01000054 12266816 ~ 12288366 (-)