RNA id: AMCG00016374


Basic Information

Item Value
RNA id AMCG00016374
length 2151
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00016374
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17503880 ~ 17506443 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACCTTGCTGTGTAATGTAGATTTTTGTGGGCCCGCCTTCTGATTCTGATAGGCGGGCTTGAAAAAGCCGGCTCCCGCTGCCTGTCTCTGATTGGTTCCCAACCCTGTCAATCTCAAAGTTGCGCAGTTCCGCGTGTGCTCTCAAACGAACTTGATTGTGGTGCTGAAGTGACAACTCCTTGCTGTGGTGCTGGGGATGCGTGGTTATAGTGTATCTGTTGTACTTTGATTTTGCTCCAGTGTTAAGGCACACGTCATCGTCACACACAGACTCCGAAAAGAAACAGCATGGCGAAGGGGAAGCGACCTAAAGTGCTCTGTGATTGGCAGAGGATTTAAATTCAGTGCTGGGCTTGCTTAATATTCTTGCGAAAACTTCATCAGCTCAATCGACATGTTTAATCATGTACAGCTGCATGAAGGGGCACTTGAATTAAAGAAACAGTGCATGAGTATAGAAGAGGGGTGATGAGATATCTGCAGCAGAGCCACCTTTGAACGAATATGCTAGAAGCCATCAGTGGCACTGTGCAGACCACTGGCGCATAACATTACTCATACAGGcatatgtttaatttctttacaaCCTCGTCATAGCTCCGTTTCTTATATTGTGCCGCAAGTGCATATGCGATCAAAACTATCTTGTTGTCATTTACTGCACTGTCATTATACATGATCTTCTGGCTGTATTGAAATCGCAGATCTAAAGAGATGTTGTGATGGAAGCAATTTGGATCTATCAGTTCAGATTGATCGTTATAGGGGACTCGACTGTGGGAAAGTCGTGTTTGCTGCGCCGCTTTACCGAGGGGAAGTTCACCGATATTTCTGACCCCACGGTGGGGGTGGATTTCTTTGCCCGCCTGGTGGAGATCGAGCCCGGGAAGCGAATCAAGCTGCAACTCTGGGATACTGCCGGCCAGGAGAGATTCAGGTCTATAACTCGTTCCTACTATCGTAACTCAGTGGGGGGACTGTTGGTCTTTGACCTGACCAATCGGAGATCTTTTGAACACCTGAAGCACTGGTTAGAAGAAGCCAAGATGCACGTCCAACCTTTCCAGATCGTGTTCCTTCTTGTGGGCCACAAGTGTGACCTCGGCCCCCAAAGACAAGTGACCCGGGAGGAAGCGGAGAAATTGGCATCGGCTTGTGGGATGAAATACATTGAGACTTCAGCCAAAAACGCCACCAACGTTGAGGAGTCTTTCACCATCTTGACCAGAGACATCTACGAGCGAGTGAAGAAAGGAGATATAACTATTCAGAAGGACTGGGAGGGGGTGAAAAGTGGTTTTATACCAAATGTTGTCCATTCCTCTGAGGAGGCCCGGGAAGGTGCCCCTGGCAGAAGGTGCCCATGCTAGCGAGCCAAATGTGAAAGGATGATATTCCTTAGCCAAAGATAAGGGATGCTGTATAGCGGGATTGACTAGTGTGTGGGGCACAGTCAGAAGATGCATTGATGTGGAAACTAGTACACCCTGCAGTCCCCTGGAGCAGTCTGCCATTAGTTAAGCACTTGGTATATAGGACATTTTGTATGCAGTGCAGAGAACAGCTCATTATTTTAGTTCCAAAAGTTGTATGTCAATTAAAACAGCACTTAGATATAAGATACATAGTGGCATATCATTACAGTACACATCTGGCTCAATAGCAGGTTTAGCTATTCCTACTACACCGTTGTGCTTCTaaattttttgtaatataagaTTTTGTTAGAAATCTGCCTGGATAGCCAAAATAGCTAAACTAGAGCATTCTATAGTAAAAAGTGCATATCTCAAACCGATTGACACTCATAAAAAAAAGCCTTTCTGTAACTCCAATTGCCACAATAATGTGCCTCCTTCCAGCAATAGATCTTTAAAAGCAAGAAGAATCTATTGTGTTGCCAATTAAAGGGCTACGAATGTATTTTGATGAACAAAGTTGCCTGTTTTGTACAAGGGGAATGTCTGAGAACACTTTGATTTGATCATATTTGGTTTACTTTAATTCTGGGAATGGTTTGAAAACATTAGGGAACCTTTTTGagagatttgaaaaaaaaagatgtgttaaactgatatgaatatttaaatatcagtttatcagtttgatatttaaatttaaattgatatgaatattacattttctatccca

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07925 RAB39B; Ras-related protein Rab-39B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16264 lncRNA downstream 7533 17495923 ~ 17496347 (-) True G13129
TU16261 lncRNA downstream 9534 17493855 ~ 17494346 (-) True G13126
TU16213 lncRNA downstream 126341 17375266 ~ 17377539 (-) True G13091
TU16181 lncRNA downstream 217051 17284403 ~ 17286829 (-) True G13065
TU16168 lncRNA downstream 237745 17263601 ~ 17266135 (-) False AMCG00016360
TU16302 lncRNA upstream 31591 17538034 ~ 17540345 (-) False AMCG00016376
TU16425 lncRNA upstream 656344 18162787 ~ 18165770 (-) True G13254
TU16520 lncRNA upstream 1319751 18826194 ~ 18901976 (-) True G13334
TU16525 lncRNA upstream 1551962 19058405 ~ 19058673 (-) True G13339
TU16528 lncRNA upstream 1570925 19077368 ~ 19077823 (-) True G13341
AMCG00016375 mRNA downstream 13461 17475418 ~ 17490419 (-) True AMCG00016375
AMCG00016369 mRNA downstream 30949 17466683 ~ 17472931 (-) True AMCG00016369
AMCG00016367 mRNA downstream 43394 17427504 ~ 17460486 (-) True AMCG00016367
AMCG00016368 mRNA downstream 90280 17380431 ~ 17413600 (-) True AMCG00016368
AMCG00016361 mRNA downstream 209005 17293088 ~ 17294875 (-) True AMCG00016361
AMCG00016376 mRNA upstream 31595 17538038 ~ 17541342 (-) True AMCG00016376
AMCG00016381 mRNA upstream 171687 17678130 ~ 17686737 (-) True AMCG00016381
AMCG00016384 mRNA upstream 190486 17696929 ~ 17704385 (-) True AMCG00016384
AMCG00016385 mRNA upstream 209325 17715768 ~ 17716983 (-) True AMCG00016385
AMCG00016383 mRNA upstream 234189 17740632 ~ 17748750 (-) True AMCG00016383
TU16024 other downstream 642701 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 642701 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 642701 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 2711911 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 3944696 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 1584796 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 2628754 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 5948649 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 6192706 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 6804594 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile