RNA id: TU16302


Basic Information

Item Value
RNA id TU16302
length 959
lncRNA type sense_over
GC content 0.30
exon number 2
gene id AMCG00016376
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17538034 ~ 17541342 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atcccctccctctccctacTTTAGAGGAGACTCAGTCACTCCCAGCCCAGATGGACCTGGACGATAAGAAACCTGCCTGCAGGACTGTGACCCTCAGAGGTACCTCAGAGTACTAACTATACATCTGTCCACGTTTCCAGCCAGCATTTCCATTTGGGACACAGAGGGGGCGTGGTGTTTCCAATCGAGCGTGTCTCCAGTGTGCCACGGTTGAGCCTGCTGACAAGGTCTCCTTTAGTCCTCCAATCCAGCCCTCTCCCAGAGTCCAGAGCAGAATGGATCGCTCCGCACAAGAGCTCTTCCTAAACTTCATGATCGTTTTAATCACAGTGCTGCTCATGTGGCTACTTGTCAAATCCTACCAGGAGTGAGGCCTGTCCCATGGAAACTGGGATCTCCCTCCAGAGGCACCACTTAGATCCAGTAATGGAGAAACGTAGAGCTGAATAACACTGTTTGCTTAGAGCAGGTGGCCTCTGACAGTAGGGCTAAAACAGCTATGGCATGAGCACTTGTATTCACTACTGTAACCCTAAAATGAGACTTTCTATACATCCCACCTTTTAGAGCAAAACAATTATTACAATCATGCTGACagccacaaaaaaaagaaagaaaaaggatctTGTGTTCTTTAACCTCTGAAAGTCATACCTCCTATTTTGTCTTTACTGCTACCATGTAAGCATCTGTGAACTGCTTGGCACATCTCTCTATGGCATAAATTTGCTCTGTATTTTCTAAAAATCTTTTCTTGTACAAGGCTTTCAATACCACTACATTATAAAAGGCACTGCAATGGTGATCCTGTTTATAAAGCTCTGAGAGTCGGGTGTTACGAAGCATGACATAGACCTGACTTATTTACAAGCAAAGATGTTGTAAAAACATATGTGAATCTTCTGTGTACATTTATGTTTACACTTTGTATAATAAAAAGGCTTCTGTCAGACAATCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16264 lncRNA downstream 41687 17495923 ~ 17496347 (-) True G13129
TU16261 lncRNA downstream 43688 17493855 ~ 17494346 (-) True G13126
TU16213 lncRNA downstream 160495 17375266 ~ 17377539 (-) True G13091
TU16181 lncRNA downstream 251205 17284403 ~ 17286829 (-) True G13065
TU16168 lncRNA downstream 271899 17263601 ~ 17266135 (-) False AMCG00016360
TU16425 lncRNA upstream 622442 18162787 ~ 18165770 (-) True G13254
TU16520 lncRNA upstream 1285849 18826194 ~ 18901976 (-) True G13334
TU16525 lncRNA upstream 1518060 19058405 ~ 19058673 (-) True G13339
TU16528 lncRNA upstream 1537023 19077368 ~ 19077823 (-) True G13341
TU16555 lncRNA upstream 1547879 19088224 ~ 19088632 (-) True G13366
AMCG00016374 mRNA downstream 31591 17503880 ~ 17506443 (-) True AMCG00016374
AMCG00016375 mRNA downstream 47615 17475418 ~ 17490419 (-) True AMCG00016375
AMCG00016369 mRNA downstream 65103 17466683 ~ 17472931 (-) True AMCG00016369
AMCG00016367 mRNA downstream 77548 17427504 ~ 17460486 (-) True AMCG00016367
AMCG00016368 mRNA downstream 124434 17380431 ~ 17413600 (-) True AMCG00016368
AMCG00016381 mRNA upstream 137785 17678130 ~ 17686737 (-) True AMCG00016381
AMCG00016384 mRNA upstream 156584 17696929 ~ 17704385 (-) True AMCG00016384
AMCG00016385 mRNA upstream 175423 17715768 ~ 17716983 (-) True AMCG00016385
AMCG00016383 mRNA upstream 200287 17740632 ~ 17748750 (-) True AMCG00016383
AMCG00016382 mRNA upstream 245513 17785858 ~ 17787095 (-) True AMCG00016382
TU16024 other downstream 676855 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 676855 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 676855 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 2746065 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 3978850 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 1550894 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 2594852 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 5914747 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 6158804 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 6770692 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile