RNA id: AMCG00016399


Basic Information

Item Value
RNA id AMCG00016399
length 933
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00016399
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18330193 ~ 18349377 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgaGCTTCTTGCTTTTGTTAGTGATTTTGTTGTCAGAAGAGATTAGCTTTGTAAACTTTGGCTTCCTGGTTGATGCCCAGGCAAATGAAAGGCGGGTGGTCGCCCATGTTCCCGGTGACATCATCATCGGGGCTCTGTTCTCTGTCCACCATCAACCCCCTGCTGACAAAGTGCATGAGAGGAAGTGTGGGGAGATCAGAGAGCAGTATGGCATCCAGAGAGTGGAGGCCATGCTCCACACCCTGGACAGGATCAACGCCGATGTCAGAATCTTGCCAAACATAACGCTGGGATGTGAAATCCGGGACTCGTGCTGGCATTCAGCGGTGGCCCTTGAGCAGAGTATCGAGTTCATAAGGGACTCTCTGGTCTCcacagaggaggaagaaggCATGATGCGCTGCACTGACAGCAACACAACCCCCATGCGGGGCAAGAAGCCCATTGTGGGGGTGATCGGCCCTGGATCCAGTTCTGTTGCCATTCAGGTCCAGAATTTGCTACAGCTCTTCAATATACCTCAGATCGCATACTCTGCAACCAGTATGGACCTCAGCGACAAGACCTTGTACAAGTACTTCATGAGGGTGGTTCCCTCGGATGCCCAGCAAGCCAGGGCAATGGTGGACATCGTAAAGAGGTATAACTGGACCTATGTGTCGGCTATTCATACTGAAGgtaACTATGGGGAAAGTGGAATGGAGGCGTTTAAGGACATGGCTGCCAAAGAGGGGATCTGCATTGCTCACTCCTATAAGATCTACAGCAATGCCGGGGAGCAGAACTTTGACCGGCTGCTGGGGAAGCTGAGAAGCCACCTGCCCAAGGCCCGGGTGGTGGCCTGCTTCTGCGAGGGGATGACCGTCAGGGGAATCCTAATGGCCATGAGAAGACTAAACCTAGTAGGGGAATTCCTGCTCCTTGGAAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16425 lncRNA downstream 164423 18162787 ~ 18165770 (-) True G13254
TU16302 lncRNA downstream 789848 17538034 ~ 17540345 (-) False AMCG00016376
TU16264 lncRNA downstream 833846 17495923 ~ 17496347 (-) True G13129
TU16261 lncRNA downstream 835847 17493855 ~ 17494346 (-) True G13126
TU16213 lncRNA downstream 952654 17375266 ~ 17377539 (-) True G13091
TU16520 lncRNA upstream 476817 18826194 ~ 18901976 (-) True G13334
TU16525 lncRNA upstream 709028 19058405 ~ 19058673 (-) True G13339
TU16528 lncRNA upstream 727991 19077368 ~ 19077823 (-) True G13341
TU16555 lncRNA upstream 738847 19088224 ~ 19088632 (-) True G13366
TU16588 lncRNA upstream 816209 19165586 ~ 19253414 (-) True G13392
AMCG00016398 mRNA downstream 37334 18274230 ~ 18292859 (-) True AMCG00016398
AMCG00016396 mRNA downstream 67995 18259160 ~ 18262198 (-) True AMCG00016396
AMCG00016395 mRNA downstream 87864 18229111 ~ 18242329 (-) True AMCG00016395
AMCG00016392 mRNA downstream 238636 18086767 ~ 18091557 (-) True AMCG00016392
AMCG00016391 mRNA downstream 260628 18020039 ~ 18069565 (-) True AMCG00016391
AMCG00016400 mRNA upstream 31087 18380464 ~ 18399758 (-) True AMCG00016400
AMCG00016401 mRNA upstream 71376 18420753 ~ 18436028 (-) True AMCG00016401
AMCG00016402 mRNA upstream 548179 18897556 ~ 18901581 (-) True AMCG00016402
AMCG00016403 mRNA upstream 656706 19006083 ~ 19014749 (-) True AMCG00016403
AMCG00016404 mRNA upstream 676461 19025838 ~ 19039504 (-) True AMCG00016404
TU16024 other downstream 1469014 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 1469014 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 1469014 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 3538224 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 4771009 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 741862 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 1785820 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 5105715 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 5349772 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 5961660 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile