RNA id: AMCG00016404


Basic Information

Item Value
RNA id AMCG00016404
length 920
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00016404
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19025838 ~ 19039504 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAAGAAGGACCAGACCCATCCCTGTGATAAACGCCAGCACCGCTTCAGAGGAAACGCGCATGTGCGGCGGAAGATGGGCGCACGGGAACAGCTAGACATGGAGGTAATGGCCCCTCTAATTGAGGAGACTGGGCAGTGTTCTGAAGACATTTCTGATGAGGATCAAGATCCTGAATTAGTTGCAGTACAGAGGCATTATGAGCTTGGCAATCATCAGGGCATTACGTTTGCACAAACCCTTATACATCTGTTAAAGGGAAATATTGGAACTGGTCTCCTTGGCCTTCCGCTTGCATTGAAAAATGCCGGAATTGTGGTGGGACCCATAAGCCTGATACTGATGGGAGTGGTAGCTGTGCATTGTATGCATATTCTGGTCCGATGCAGCCATCTCCTATGTGAAAGattGAAAAGACCTCCCTTAGGATACAGTGACACCGTAGCGTTAGCGATGGAACACGGCTCTTTGAAGTGCCTTAAAAAGGGGGGCACGTTCGGCAGGTATCTAGTTAGTTTCTTCCTTGTTTTGACGCAGCTGGGATTCTGCAGCGTGTACTTCGTGTTCCTGGCAGAGAATATCAAGCAGGTTGTCGAGGGCTACTGGAGGAACGGCACAGAGATTCCTCACTCCTATGGCAATGGCTCCACAGCTGTCCAGCAGGACTGCGGTGGCCTGGACCTGCGTGTGTACATGCTGTGCTTCCTGCCCTTCTTCATCCTCCTCGTGTTCATCCGAGACCTGAAGAACATGGCGGTGCTTTCGTTTCTGGCCAACGTGTCAATGGCTGTCAGCATTGTCATCATCTTCCAGTATATACTAAGGGATGTGGGGGACCCACGTGGACTTCCTTATGCATCCAGTTGGAAAAAATATCCCTTTTTCTTCGGcacagcaatttttgctttcGAAGGAATAGGC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K14209 SLC36A, PAT; solute carrier family 36 (proton-coupled amino acid transporter)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16520 lncRNA downstream 123862 18826194 ~ 18901976 (-) True G13334
TU16425 lncRNA downstream 860068 18162787 ~ 18165770 (-) True G13254
TU16302 lncRNA downstream 1485493 17538034 ~ 17540345 (-) False AMCG00016376
TU16264 lncRNA downstream 1529491 17495923 ~ 17496347 (-) True G13129
TU16261 lncRNA downstream 1531492 17493855 ~ 17494346 (-) True G13126
TU16525 lncRNA upstream 18901 19058405 ~ 19058673 (-) True G13339
TU16528 lncRNA upstream 37864 19077368 ~ 19077823 (-) True G13341
TU16555 lncRNA upstream 48720 19088224 ~ 19088632 (-) True G13366
TU16588 lncRNA upstream 126082 19165586 ~ 19253414 (-) True G13392
TU16615 lncRNA upstream 217134 19256638 ~ 19256919 (-) True G13413
AMCG00016403 mRNA downstream 11089 19006083 ~ 19014749 (-) True AMCG00016403
AMCG00016402 mRNA downstream 124257 18897556 ~ 18901581 (-) True AMCG00016402
AMCG00016401 mRNA downstream 589810 18420753 ~ 18436028 (-) True AMCG00016401
AMCG00016400 mRNA downstream 626080 18380464 ~ 18399758 (-) True AMCG00016400
AMCG00016399 mRNA downstream 676461 18330193 ~ 18349377 (-) True AMCG00016399
AMCG00016409 mRNA upstream 69638 19109142 ~ 19143518 (-) True AMCG00016409
AMCG00016410 mRNA upstream 115830 19155334 ~ 19161728 (-) True AMCG00016410
AMCG00016414 mRNA upstream 145434 19184938 ~ 19205594 (-) True AMCG00016414
AMCG00016419 mRNA upstream 237794 19277298 ~ 19279668 (-) True AMCG00016419
AMCG00016420 mRNA upstream 242198 19281702 ~ 19316677 (-) True AMCG00016420
TU16024 other downstream 2164659 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 2164659 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 2164659 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 4233869 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 5466654 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 51735 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 1095693 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 4415588 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 4659645 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 5271533 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile