RNA id: AMCG00016420


Basic Information

Item Value
RNA id AMCG00016420
length 3620
RNA type mRNA
GC content 0.45
exon number 20
gene id AMCG00016420
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19281702 ~ 19316677 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAGGAAAGACGGAGGGAGATTTCACGTGGCGTGAAACTGACATCACACAGTTTTGGAAACaatcctgaaaataaaaatcccaaaTGAGAAAGGTCTCCCTTTGATTAAATCAAACTGTGTATGTTCTGCTGTGTGTCCTGCTGACATTTTAACTTCAAGATGACCTCTGAAAATACCCgagatgATGAGGACACATTCAATATTCTGCTAGCCACCGACATTCACCTGGGGTACATGGAGAAAGATGCCATTCGGGGCAATGATACCTTTGTGACGTTTgatgagattttaaaatgtgcaaaagagAATGAGGTTGACTTTATATTGCTTGGTGGCGATCTGTTTCATGACAACAAACCCTCTCGGCGGACCCTGCACAGCTGTATGGAGCTAATGAGGAAGTATTGCATGGGAGAGCGGCCTATAGTCTTTGAAATCCTCAGCGATCAAGCAGTAAATTTTAGCAATAGCAAgtttCCATGGGTGAACTATCAAGATGAAAATCTGAACATCTCCATTCCGGTCTTTAGTGTGCATGGTAACCACGACGATCCCACGGGGGCAGATGGTCTGTGTGCGCTGGATATCTTGAGTTGTGCTGGACTGGTTAATCACTTTGGCCGCAGCAGGTCTGTGGAGAAGATTGAAATCAGTCCCATTCTTCTGCAGAAAGGAAACACAAAGATATCGTTGTATGGCATTGGGTCCATCCCAGATGAGAGGCTTTACAGGATGTTTACCAATAAACAGGTGGTCATGCTCAGGCCCAAGGAGGATGAAAATAGCTGGTTCAATCTGTTTGTTATCCATCAGAACAGGAGTAAACACGGGGCCACTAATTACATCCCTGAGCAGTTTCTGGACGACTTCCTGGACTTGGTGGTGTGGGGTCACGAGCACGAGTGCAAGATCGCCCCGGTCCGCAACGAGCAGCAGCTCTTCTACGTCACGCAGCCGGGGAGCTCTGTCGTCACGTCGCTTTCTCCGGGGGAGGCGGTCAAGAAACACGTGGGCCTGCTGAGAATCAAGGGGAAGAAGATGAACCTGCAGAAGATCCCTCTGCACACAGTGCGTCAGTTCTTCATCAACGATGTGGTATTGGCGGACCACGCCAGCCTCTTCAACCCAGACAACCCCAAGGTCATGCAGAAAATAGAGGCCTTCTGCAACGAAAAGGTGGAGGAGATGCTGGAGCAGGCAGAACGAGAGCGGATGGGGAATTCCTTGACTCCAGAGAAGCCGCTCATTCGCCTGAGGGTTGACTACAGTGGGGGATATGAACCATTCAACATGATGCGATTCGTCCAGAGGTTTGTGGACCGAGTGGCGAACCCAAAGGACGTTGTGCACTTCTTCAGACACAGAGACCAGAAGGATAAAAAAGatgatgAAAACATTAACTTTGATCAGCTGGTGAACAGGACCTCATCTGAAGTCATGCAGTTAAGAGTGGAGGACTTGGTGAAACAGTACTTTGAAACAGCAGAGAAAAGCGTGCATCTGTCCCTGCTGACGGAGCAAGGCATGGGGAAGGCAGTACAGGAGTTTGTGGACAAGGAGGAGAAGGACGCCATTGAGGACCTGGTTAACTTCCAGCTGGAGAAAACACAACGCTTCCTGAAGGAACGCCACATAGAAGCCGCTGAGGACAAGATCGATGAGGAGATTCGCCGTTTACGAGAATCAAAAAAGACAACcgcagaggaagaggaggaagtcCAGCAGGCTATCAGCAAAGCTAAAGCCATGCGTGGACAGCCCTCCTCGTTTGTGGACGATGTGATGGACGTGTCTGAAGACTTTGGGATGGACTCCGATGACAGTGGCCCTCCACCCTCAGTGTCGACACGTGGCAGGGGCAGGGGACGTGCGCGAGCAGCCAAGAGAGCCGCCTCCCAGATGGAGCCAAAGCCTACTGGCCGAGGACGCTCCTACAAAAAGCCACTGATCAGCCCCTCCAAAAACATGTCCATCTTAGATGcCTTCAATTCCAGTTCTCAAAGGCCTTCTCGAAGTTCAGCCCCTCCAAAATCAGAAGAGATTATAATTGATGATGACTCGGATGACGACGCAAGTTTTTCCCAGCCTTCCAAACCTAATCAGAGGGCTTCCAGGGTGTCAAGTAAGACAAGCTCCCAGAGTCAGTCGCTGAAGGGGCTGTGTTTTGAAGATGATGAAGATGAGGATGAATACAATCCCTTTAAGAGCTCCGGCAGCTCGAACAGAAGAAGCCGCAGATAGCTGATAGAAAAGACGTCTACCCCGCCACATGCCTCCGATTGTTCTATCATGGGCTTCTTTATTGTGATTGCTTTCTACCCTTTTCCATCGCTGAGATTCGAGTGTTTCGCATGGTTTAGGTTATCAGCTGCACCCACACGCAGTGACTTACTGAACACCAGGATGAGTCAGACTGCACTTCAGGTGGAAAAAGGGTTCTCTCTAGGTATTTCAAGCCAGATCCCCCTTTGTTCGTctgtgttttttgctttgttgtggCACTGCCATTGCCATTGCCATTGATGAAACTCAGAGTGGTTGTAACTTAATTCAGCTTTAAGTGGGACCTTTGAATGGCTTTAGAGAAGCAGCCTTGAATTGTACACAGAAGCAtttaattccatttatttttcatttttctttggttatttttctttattactgGAATTGCATCCATAAGAAcccaaaactttgacctacccttgaattgcaaattatacatttataccctattttgttttgttttagaagaGAAAGTGTCTTCTGACAATACACTAAACTGCGATGGGGTATGTTTGTATGCAAAGCTCAAATAAGAAGGAAATACCGATAGTAAATGCTAGTAATCGCCAGTGTAGGTAAGAGACTTAACTCTGCAGTCCTCTTTGTTCCTTTTTGTCCTTCACAGCTTTActcttaaatgtaattgtaatatagtAATTCAAGGGTATAATTACTCAGGAAAGCAAGGAGATTTTCTGTCATaaagaatacacattttctgcCAATTATACGCCCCCATCTCTCGCCTTGCCTTGCAACAGAATAACCGCACTGAGCAGTTATGTGGGAATTGCAAATAATGGTATGACTACCCCCTATACATACACTGacaaaaactaagaaacaatgAATACTATACAATAAAAGGAacgttttgtttcctttcttgaGTAGCTACTCAACACTGCACCTTCAATTctagttgtttatttttctgagaTTTCCAGTATGTGCACTGTTGCCTTGCACCTATAATTTTCAAATTCAGTGAATTAACATCCCCTCTTACAcatttcttcattgtttttactATATCATCCTTGCACACCTGTTATATTGGAGCTTTTATCCTCTTCAAGTGATTTGGTATGGGATTAGCTAAATGAATCTGTCCATCATCTTTACTCCAAGTGAACtcacttatttttcttcagctgTAGTCTGTTGGATTATAGTTTAAGCTGCCATCTCTACAAACTATTAAGTAATGATTGCTGTTTATTAAagaaattatcattatttctttTGATTAATCACCATTGTGTTTCGGGACGAACTGATTATATGCAATGTgaacatttgtacatttattattaaagagACATTTTGTACCCAA

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0005634 nucleus cellular_component
GO:0030145 manganese ion binding molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0004527 exonuclease activity molecular_function

KEGG:

id description
K10865 MRE11; double-strand break repair protein MRE11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16616 lncRNA downstream 23145 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 24783 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 28288 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 193070 19088224 ~ 19088632 (-) True G13366
TU16528 lncRNA downstream 203879 19077368 ~ 19077823 (-) True G13341
TU16865 lncRNA upstream 686472 20003149 ~ 20004940 (-) True G13615
TU16939 lncRNA upstream 999065 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 1151569 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 1170204 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 1278652 20595329 ~ 20598765 (-) True G13789
AMCG00016419 mRNA downstream 2034 19277298 ~ 19279668 (-) True AMCG00016419
AMCG00016414 mRNA downstream 76108 19184938 ~ 19205594 (-) True AMCG00016414
AMCG00016410 mRNA downstream 119974 19155334 ~ 19161728 (-) True AMCG00016410
AMCG00016409 mRNA downstream 138184 19109142 ~ 19143518 (-) True AMCG00016409
AMCG00016404 mRNA downstream 242198 19025838 ~ 19039504 (-) True AMCG00016404
AMCG00016418 mRNA upstream 49407 19366084 ~ 19375596 (-) True AMCG00016418
AMCG00016424 mRNA upstream 61323 19378000 ~ 19406939 (-) True AMCG00016424
AMCG00016423 mRNA upstream 110778 19427455 ~ 19437740 (-) True AMCG00016423
AMCG00016425 mRNA upstream 129877 19446554 ~ 19455857 (-) True AMCG00016425
AMCG00016426 mRNA upstream 143616 19460293 ~ 19498100 (-) True AMCG00016426
TU16556 other downstream 176321 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 2420523 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 2420523 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 2420523 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 4489733 14790203 ~ 14791969 (-) False AMCG00016293
TU16905 other upstream 818520 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 4138415 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 4382472 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4994360 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4994360 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile