RNA id: AMCG00016425


Basic Information

Item Value
RNA id AMCG00016425
length 4106
RNA type mRNA
GC content 0.47
exon number 16
gene id AMCG00016425
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19446554 ~ 19455857 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGATGGCAGCTTCCTGTCCCTGTACCAGCTGTGTGCTGTGATAGGAGCCTGTTGGGAACATAGGGCTCTCTGTTCATTTGCGCTGGTGTGGCTTTCTGTCTCTCTAGCTTTGAGTTTCCTCAGACGCAGGCAGGCGACCGCGGCCATGGAGAAGAGCGGCAGCAGCGACAGCCTGGGGTCCCAGCGGTCCTCCTCCCGGCAGCCCAGCGTGGACTCGCTCGCCAGTACTTCCACTTCCACCTCTCGGTCCGACCGCTCTTTTCAGGCGAAACCTCCGTCTGCTCTCTCCTCTGACTCGGTCtccacttccactgagttctccCCTGAGCTCAGGGGTAAAAGCATTCCAGATGTTAAGGTGCTAAGGGACGCTAATAAATTGGCTCAATTGGAAGAACCTCAATTACTACCCAAGGAATCCATACAGGATATGGcTAAAGATGTGACTTATATCTGTCCATTTGTTGGTGCTATAAGGGGAACCATGACTGTTACTAACTACagactgttttttaaatgcatagaaAGGGATCCAGCATTCGTCCTGGACCTTCCCCTGGGAGTGATCAGCCGCATCGAGAAGATCGGCACGGCCTCGAGTCGTGGGGAGGTTTCTTTCGGACTCATCTGCAAAGATATACGAAATCTGAGGTTTGCTCATAAACAAGAAGGTCACAACAGGAGGTCGATATTTGAGACCCTCATGAAATTTGCATTTCCCATTTCCAATAGCATGCAAGTCTTTGCATATGATTATGGACAGGTTTTCCCTGAAAATGGCTGGAAGATGTATGATGCCATTTCTGAATATAAGAGACAGGGCTTGCCCAATGAAAGCTGGCGAATAACGAAGGTCAATGACCACTTTGAGCTGTGTGACACCTACCCCGCTGTACTGGTCGTACCTGTCAACATTCCTGATGAAGAGCTGAAGAGAGTTTCAGCCTTCAGGGCCAAAGGTCGAATCCCAGTCCTGTCGTGGATCCACCCAGAGAGCCAGGCCACCGTGACGCGCTGCAGCCAGCCCATGGTGGGGGTGAATGGGAAACGCAGCAAAGACGACGAGAAATACCTGCAGGCCATCATGGACGCCAACGCTCAGTCCCACAAGCTCTTCATCTTTGATGCCCGGCACAGTGTCAATGCGGTCGCAAACAAGACGAAAGGCGGGGGCTTCGAGAGTGAGGACGCCTATCAGAACGCAGAGCTCGTGTTTCTGGACATCCACAACATCCACGTGATGAGGGAGTCCCTGCGCAAGCTCAAGGAGGTGGTGCACCCCAACATCGAGGAGACCCACTGGCTCTCCAACCTGGAGTCCACACACTGGCTGGAGCACATCAAGCTGATCCTGGCCGGGGCGCTGCGCATTGCCGACAAGGTGGAGTCGGGGAAGACCTCGGTGGTGGTGCACTGCAGCGATGGCTGGGACCGCACCGCTCAGCTCACCTCCCTCTCCATGCTGATGCTGGACAGCTACTACCGCACCGTCCGCGGCTTCCAGGTGCTCGTGGAGAAGGAGTGGCTGAGTTTCGGACACCGCTTCCAGCTGAGAATCGGACATGGGGACAAGAACCACACGGACGCTGACCGCTCCCCCGTGTTCCTGCAGTTCATCGACTGTGTGTGGCAGATGACAAGACAGTTTCCCGCAGCGTTCGAGTTCAACGAATACTTCCTCATCACAATCCTAGACCACTTGTACAGCTGCCTCTTCGGCACCTTCCTGTGTAACAGCGAGCAGCAGCGAGTGAAGGAGGAGGTGCAGAAAAAGTCCATCTCACTGTGGTCCTACATCAACAGTCAGCTGGAGGAATTCACCAACCCCCTCTATGTGAACTACACCAACCATGTTCTGTTCCCCGTGGTCAGCATGCGCCACCTGGAGCTCTGGGTGGGCTACTACATCCGCTGGAACCCCCGAATGAGGCCACAGGAGCCCGTGCACCAGCGCTACAAGGAACTGCTGGCCAAAAGGGCAGAGCTGCAGAAGAAGGTGGAGGAGCTGCAGCGTGAGGTGACCAATCGCTCGGCCTCCTCCTCATCTGAGAGGGCGGGCTCCCCCACGCGCTCCATAACGCCTGTCCAGACCTTTGTCTGAGGAGCACAGATCCACTCGCTGCACCTGCCACCCGGTGCGCTGCTTCCAAACAGATCCTATTTATGACCAGTATACGTATACATTGCACTGTAGTTAATTTCTGCAGGGATCGCTCTGGAAAGAAGCCTTGCAGTGACATATTGGGAGACACGAGAAGACGAGCTTCGGCGCTGAGCTTCACTCCTGCTCTCACCAGCTGCAGCTCCCCTATGCTAGGACTCCAACCCTTACCTCCGGAAGCGGAACGGGAATGTCATTATCAGCGGCCGTGGGGTGGCCTCACTCACTAGCCATATTCTAGTGCCCTCTGTGGGAGGGAAGCTTGCATCCAGACTCTGCCACCGATTATTCACAatttacagttattaattttattttgtgtaacaaGCTTATTATcccttaaaatgtattcatttctttAGTCTGGGGTTTTACAGAAGCTATGTGATAAAATGCATTCAGTCAACCAGTTATTGGAACTGAAATAGAGGTAGTTAAAGCAAGTATAGAACTGCCATGGTTTAAGGTAAATTGTGCTTTCTAAACTTAATCAATACAGAGAAGTGTCTTTGCTTCCTCACATGCACAGAGCAGTTGATAGGCAGCCAAACAGCCAAACACATGATAGGTGACCAAATGTTGTTGCTAAACACTCTGCCATTTTATTCCTCTTATTGTACAAATAGTATATGTTCCCTATGGTTTAGCACTCCCAAGTATCCCTCTGGAGATGTGTGTTGGGAGTGCTTCATCATTGGATAATGGTAGCTAGCTGGACTTGCCTACTTCAAGTAGTCTAATGGGTTGCTTTGAAGACCTCACTAATAGAATGTAGTATGAAGAATCCTTGAAACCTTGAGACTATTAATATAGGTATATAGAGCATGAAGAGATGAACCTTGGCTTCTATAATCATTATtaagtgtaaatgtatataGGTTTGCTAACTTATATTTGATAGTCTGCTGGGTGACACAGCACcagttgtctttatttttcagatccCAGTGCTCTGGTGAACGCTCTGCAATCCCACTGTGCCCAACAATGCTCAACTCCCAGACAGCTTCATTTTACTTCCTGTGTCCATCTTAAGTACATTTCTGGTGCTACAATGTTGCGTTCAACACCCTTCCACAGGAGAAGCATGCTATCAAGTGCTACATGTTCTGTTCATTGGGAGGCACACTGTAGTGTTTTACCCTTCTAACCTCtgtaaagcaaaatatattttcacatttactcTGCTTTATCCCATTGAAAGCtctatatttataaacactatatctcaaatgttgtaaaattccATCAGAAATACTTTGTTCAAAATAACCAATCGTGCAGTTAGCCTACTTTGCACTTACTTTATTGCACTAACCGTTCTACCACTAAACGAAGAAATGTATCATTTATGGTAAGACAGTGATGCTAAAAAACGCTGGTCGCATTTACAGTGTGAACCAGCTTCGTTTACTTGGgtttgaaaattatttatttaatgaaggtGGGATGATGTATGTGTAAAACCATTGTTATAACAACTAGCTtgtaagtaaatatttattttcatcttttgcatttgtttgtataaTCATTTAACCATGTTTTTGGTTTGAATTCAATTCTCCCCCTAAGTGGGGAAATCATTGCCACTGCTGTTTTCATTGTAACTTGAACTGACTGAACAATGTTCCCATAATGAAGTGGATTATCTGGCACTGTAACTAGTTGCTGGATAGTTTCACTGGATGACTcgtgttttaattgcattccGTTCGTAACATCACTAATCCCAGtactgttcattatttttttatttgttttgcattccaTACACAAATAAAGCCATTTCAGAGCTTTTTAATTGTGAGTTCATTTCCTGATTTATAATGGTAACTATGccagctgtatatatacaaagaGTTGAAtgtagtctctctctctgtctcatctatacatctatatacactcacctaaaggattattaggaacacctgttcaat

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18081 MTMR1_2; myotubularin-related protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16616 lncRNA downstream 187997 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 189635 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 193140 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 357922 19088224 ~ 19088632 (-) True G13366
TU16528 lncRNA downstream 368731 19077368 ~ 19077823 (-) True G13341
TU16865 lncRNA upstream 547292 20003149 ~ 20004940 (-) True G13615
TU16939 lncRNA upstream 859885 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 1012389 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 1031024 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 1139472 20595329 ~ 20598765 (-) True G13789
AMCG00016423 mRNA downstream 8814 19427455 ~ 19437740 (-) True AMCG00016423
AMCG00016424 mRNA downstream 39615 19378000 ~ 19406939 (-) True AMCG00016424
AMCG00016418 mRNA downstream 70958 19366084 ~ 19375596 (-) True AMCG00016418
AMCG00016420 mRNA downstream 129877 19281702 ~ 19316677 (-) True AMCG00016420
AMCG00016419 mRNA downstream 166886 19277298 ~ 19279668 (-) True AMCG00016419
AMCG00016426 mRNA upstream 4436 19460293 ~ 19498100 (-) True AMCG00016426
AMCG00016428 mRNA upstream 203559 19659416 ~ 19698145 (-) True AMCG00016428
AMCG00016427 mRNA upstream 281437 19737294 ~ 19757848 (-) True AMCG00016427
AMCG00016435 mRNA upstream 361264 19817121 ~ 19857504 (-) True AMCG00016435
AMCG00016436 mRNA upstream 405597 19861454 ~ 19865695 (-) True AMCG00016436
TU16556 other downstream 341173 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 2585375 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 2585375 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 2585375 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 4654585 14790203 ~ 14791969 (-) False AMCG00016293
TU16905 other upstream 679340 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 3999235 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 4243292 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4855180 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4855180 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060273 True 2132 mRNA 0.50 16 NC_007116.7 23608026 ~ 23619911 (-)