RNA id: AMCG00016428


Basic Information

Item Value
RNA id AMCG00016428
length 6579
RNA type mRNA
GC content 0.46
exon number 32
gene id AMCG00016428
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19659416 ~ 19698145 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAATCACCAGTTGAAGACCCTCCTGAGGTTGAAAAGGCACCAGACGTTCCTCCCAGGACCAAACTTGTGCCTCAGCCTCAGCCCCCTACCCTGCCTCTTCTGCCACAGAGGAAAGCCCCACATGTACCTGTTATCAGAACTATTTCCATAGACTGTGCAGAGGACTATGAAGTTCCAGATACAACACAGAACCACTTGTTTGACCACTTAGACATGGCAGACAAGGACGACTTCAGTAGCCTCTACAGTGACGATGAGATccttgatgatgatgatgatgacagcTATGAAACCATCCCGAACAATGGAGGATCCTGGCAGGATTATGGGCTTAGCACCCTCAAGGATAGCGTTTACCTTCCTGCAATCGGGAAAAGACAGTCTGCCTTGGGAAAAGAAGGCAACTCTGCACCTCAGCTGACTCCAGTCATCAAGATGGGCTGGCTGGACAAAAACCCGCCCCAGGGGTCGTTAATCTACCAGAAGCGCTGGGTGAAGCTTGATGCAGATTTCTTGAGATACTTTGATAATGATAAGGATATGTATTCAAAGCGAATCATACCGACGACTTCCATTACTAACATCACCAATGTAGGAGACCAGAAATTCGAAGTGGTCACCCACAACAGGACTTTCGTCTTCAGGGCGGACAGTGACTttgagcGCACCGAATGGGTGACTGTGCTACAGGAGACCATAAGGGACCAGAAGTACACCCACAAGGATCTCTCCGGTCAGCACCTGCACGGCGCCGCTGAGATGCAGGGGTACCTGGAGCTCAGGGGCCTGCGCTCCAAGCTGTATGTGGTCGTCTCCGGGGATAAAGTCCTCCTCTACAAGAACATGGAGGATTACAAGCTGGGCATTGGGATCACGTCCATAGACATGAATGTGGGCAATGTGAAGGATGCTGACCGGCGAGCCTTCGATCTCACCACTCCCTACAGGACATTCAGCTTCGTGGCAGAGTCAGACCAGCAGAAGGATGAATGGGTAGAGGCCATGCAGAATTCGATTGGGGAAGCTCTCTCCAACTACGAAGTGGCTGAGAAGATCTGGGTAGACGAATTCAACCAGTTCTGTGCAGATTGCGGGGCTGCCAAACCCGAATGGGCCGCCATCAATCTGTGCGTGGTTTTCTGCAAGCGCTGTGCAGgTGAACACAGAGGTCTTGGACCAAGCATATCAAAAGTGCGGAGTCTGAAGATGGACAAGAAAGTCTGGACAGATGAGCTAATTCAGttgttcCAAGTGCTTGGTAACCGGGGGTCCAATACATTCTGGGCTGCTAATGTGCCCCCGAGTGAGGCCCTGTCCCCGGCGAGCTGCAGTAGTGACAGGCGCAGGTTCATCGCTGCCAAATACAGAGAGGGGAAGTATCGCCGATACCACCAGCTCTTCGGAAACCAAGAGGCTCTGGACAACGCTCTGTGCATCAACATCCAATCGAATGACGTTCTGGAGACTCTGTCCCTGGTATTCTGTGGAGCCAATGTGAACTGTGACACGGGAAACCCCGACTTCCCCACTCCCATCTCCCTGGCTCAGAGCTACGAGCAACACCTACAGGTGGAGTTCCTGACCCAGAACAAGAACACGGAGATTCCTAGGTCAGAGGTGGGAGGTCACATGGACACAGTGCACTATATGGCCCCGCCCTCCATCACACACAATGGATTTTTGTACAAGACCGCTTCGATGGGAAAGCCGATCACCGAGCGCAGAGCTAAAGAAGAGTTTAGTCGGCGCTGGTGCACTTTGAATGATGGGAATTTCAATTACTATGAGAGTGACCGGAACTCGACACCCAATGGGGGTCTCAAGATGAAGGAGATCGTCTGTCTTGTTGTCAATCCCTTAGAAACACATGGTTACGACCACACGTTTGAAATCTATACAGACTCTGAGAGGCTTTATCTCTTCGGGACCGATAGTCCTGATGTCATGCGGGAATGGGTGAAGTCTATTGCCAAGTCTTTTATCCCATCCAGTGCGGAGGACTTGCTCAACCGGGACTTTGAGAGAATTGGGAAGCTACAGTACAAAGATGGGCTCAACCTCCAGAGCCCGAAGGTGGGCTGGTTCTCTCTGGTTGGCTCCACGCTGTACGCCTGTTTCGAGGACAGTGAAGGGGAAGAAGCCATTCACCTGAAGAAACTGCAGGAGCTCTCCATCCAGCAGGAGAATGAGGTGCTCGTGCTGGTGGAGAGGAGAAGGACTCTCTACATCCAGGGGAATCGGAAGCTGGATTATCTGACCTGGTCGACAGCCATACAGCGGGCAGCCGGGAGCTCTGGCGACACACTGAGCCAGCAGCAGCTCACAGAGTCGGACATCCCGGTGATAGTGGACCGGTGTATTGACTACATCACGCAGTGCGGCCTGACATCAGAGGGGATCTACCGGAAGAGCGGGGTGAACTCCAAGATCGCCACACTGCTGGAGTCTTTCCGCCGGGATGCCCGCAGTGTGCGGCTGAAGGAAGGAGAGCACCAGGTGGATGACGTGTCCAACGTCCTCAAGAGGTTCTTCAGAGATGTCAAAGAGGGCATCTTCACCAGTGAGGCCTCCGCTGCCTGGCTCAGCACCTCGGCTATTGCAGATGAAAGCCAGAAGATCTTGAATTACCAGTCTTTGCTCAGCAGCCTGCCTCGAGTAAACAAGGCCACTGTGAGAGCCCTTGTCAACCACCTCTATTGTGTCCAGCGATTTGCAGATATGAATCAGATGAATCTCCATAACCTGGCCATCGTGTTTGGGCCCACACTCTTCCAGACCGACGGCAAGGACTACAATGCTGGCAGAGTCATTGAGGAGCTTATTGGCCACTATGTGGCCATTTTTAATGTTAATGAACAGCAGCTGAAGAAACAGTTGGATGAAATTACAGCCATCATTAAGCTACGGGAAATTAACTCCAGCAGCAAGGTTCCACCTGCTGGAGATTTCATTTGCACAGTTTacctggaggagaagaaggagacagCAGAGCAACATGTAAAGATCCCAGCGACCATGACCGCGGCTGAACTTGCCTTGGAGATCCTCGACCGGCGAAAAATCTCTGTGCGGGAGAAGGATTACTGGTGCTGTTTTGAGGTGAACGAGAAGGAAGAGACAGAGCGGCCTCTGCACTATCAAGAGAAGGTCCTGCCCATCCTTCACTCCATGGGCACAGAGAGCTGCCTGGTGGTGAAGAAGCACTACTCCATGGAAGCCATGCTCATCTATCTGGCCAGTAAAGTGGATGACTCGAAGCACGGCATGATGAAGTTCCGTGAGGAGAGGAACCTGCTGGGTTTGGGGCTGAACACGGGCAGCTTCCACGACCGCTACTTCATCCTCACCAGCACCTCTCTGAGACTCTACAAGGAAGTGCGGAGTCACCGGCCTGAGAAAGAGTGGCCAGTCAGATCCCTGAAGGTCTACCAGGGGATCAAAAAGAAACTGCGACCGCCAACCTGcTGGGGGCTGACTGTTGTGTATGCAAATGAGAAACACGAGAAACAGCATTGGTATCTGTGCTGTGATACACAGACTGAGATGAGGGAGTGGTTTGCAACCTTTCTAAGTATACAGAATGATGGCAATGTGTGGCCTTCCGAGACTATCAAGATGCGGGCGTCTCGGGTGCCTCTTGATACCAGGTTGGGTAACATCTCTTTGATCCCACTGAGGGGCAGTGAAAACGAGATGAGAAACAGCGTGGCTGCTTTCGCTGCTGACCCGCTTGCTctCTTCCGAGATTTATGAAAATTTAGCTTGACATTCAGGAAACGACGGAGCAAGCAGAAGAACGTCTTTTTCAGAGTGAGGCCCGGCTGCAGTAACATTAAAGTGAAGCTAGAACAGTTTTTGGTGTAAACTTTTCAGCATTGTCTGATAGTAAGGATTGTAGAAACAGACTTCAGCAAGTCTTACTCCCCAGCTCAGCTGAACGGTGGGGACTGGACCGATCCATTCCTGCACCGAGCTCTTCACACTCAAGACCGATCTCTGTGATGCCCTTTTTCATATGCGCTCAAGTAGATTCCTACTGAGCAGGGGCTGTGAAACTTACACGCCGGCCCTTATCACCACGTAGCAGCAGTCTTTAGGAGTGTCTTGGGGCTTATAATCCAAGGCCATTCTCGGTGTTTTGAAAGCTGTTGTGAAaacagtctttttttgtttttgtatagtgCCTTTCAAAACAGTTCCTGGATCCTGGAATTCTGGGTAATCTGAAATCACTTTCCTCCACCATTTTCCTGTCAAattttaacataacattttattaacctttaaaatgaataaatagatcCTTCAGATATGACAATCTGTGCAAAGACTTTGCCAGGACCATCATGGGAGAATGAAGACCTGAGATTGGATAAATGCAGCTTTTCTTCGAGAGGATACAACACCTGTTGCTGTTGCTCTTTGATCATAAACACAGCGAACTGTGAAAACCACTTGCTTATCATTTCAACAAAGTTTGTTGCTTAACTTATTGTTGTGCAGATGCCTTTTAATCGTTTAAGACCATGTTGTGAAGTAGGTGGCATGCCTCACAATTGCTTCagttatttcacatttcacatagTTGTCATCTTCTTTTAGAAATGCACTGTGCTGAGCTGgtttggtattttttttgtttagttctaaagaaagaaatatcaattgaaatgcattattttatttaaaataaatacttttgatttaCTCTGTAGAAGAGTGAACAGCTTACtgcaacaatgacaacaattaAGTGTCAGAAGCACAACATGCCAATTCAACAAAAGGTCGCTTTCCTAGCTCAAATTTCTTTACTAAATATTGTCTCGTACAGATTCGACAAATAGCTTCCCTTTATAGCTTGCAGTGGAATGTTTTAAAGGCATATTATAGTTCTTATTTCTTGTACTGTGGGATATTAGTCACATATGCTCTATACACTTGTGGTTGTGAATGACTGGGGCACATTAACAAGAGAAattcccatttttattaaaaattgtaTCACAAGAATTAAGTCTctccagacaaaacaaaacaaaaaccataatAGCTTTCCCACAGTATATTGCCCATTACTAAACCACCACTGCTGTTCGGGTGATTTAACCACAAAGGTTTCATCTAATTAtgacagtttgttttcttgagtGCAGTAACACTATCAGTATACTGAGGCCATCTCAGCCCAGAcgcattttctacattttaattggaataAATGCTACACACTGTGCTAAAACAACatctttcatattttgaaatgtatgatttCTTGGCAATAGTTGTGTTGTTGTATGTCTCTGTCAATCAGGAATTCTGGGAGATTCCCTTTACCACAGGTGTTGATTTTAGCagaatgcttttctttctaCATGGGGTACGGTAGATGTTGGTGATGGCATCACATTGCGACTTCTCGACCAGctcttgtttaatttcataacCTTCTGAGAACATTATCTTGTGTACCTCCAAACATTACAGGTCTAAAGGTAAATACATCTATGGTATAATTTTACCAGATTGCTTATGGTTAAGTTAATGGCTACAAAGATGAAAATAATGATACTGACTTATGGGTTAACCCAGCCTCTCAGTAAGGAATGGCTTGGCAACAATGTCATCTGAGTGCTGCTTTTATTTGATGTAAAGGTCACTCCCATAAAGGATTATTCAGAAGGGGCCATCAAGCTGATCTGTAATTCTCCCTTTGAAGAAGACTGATGCATATTTTTAACTTTTCGGAGAAATGCTATTACAATTCCTCCCATGTGGGGTTTTGTCtggattgtatttttaacttcCCTGTCAATTGAAAGCAACAATTCACAAACACTATAGAGACCCCATCACTGTGCCTGGAATAAGAAGATCTGAGGACTCCTATCCTATCTTAACATGGAAGAGCAAAACTCCTAGCAACACTAAAGCCATTGCAAGGGCTGGGAACTTGTCTCTCAGTTCTCAGTCTCAATCCCCCAGCTGCAGCTTGTCTTGTGAAAGCTCAGAGATTGCCTTCAGCAGCTGGCTAAACTGTCAGTCTGAGTTTGCTCTTATTACCTTCCCGTTTACTCTTCATTTTCATCTCCTGAGAGACGGGTGACGTCTGGGTCAAGTGTTTCGGAAAAATGCATCCTCACAGGCCCCTTCAAATGGCTCGTATGGCTCAAACGGTAGAGAACTCGGAGTGAACTGAGTCAGGATGCACTTCTCTGTTCAAGAACAAATACGGTTGTGTCTTAGTGTGCAGTATTGATTTAGAAAGCAGACCTGCTGTTGCATAATAGAGCCTTCATAACAATCCATGACTTTCTCAtcctctttttttattgtacattatatcgctgtttaaaatgtttgctattcttgttttttaatgtccGTGTAGTCCATTgtgattaatattttgtataaagaAATCGTTTCCCTCTTAATTTTAGTgtatgtcatgtttttattatacaaatatgtaaatatatatatatataaatactgtagcAATAACTGGAAAGCTACTGTAGCACATGGAGGACTCGGGTAGAAAGATGTCCGAATGGGTGGATCACCTGTCTCCTG

Function

GO: NA

KEGG:

id description
K18439 ARAP1; Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16616 lncRNA downstream 400859 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 402497 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 406002 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 570784 19088224 ~ 19088632 (-) True G13366
TU16528 lncRNA downstream 581593 19077368 ~ 19077823 (-) True G13341
TU16865 lncRNA upstream 305004 20003149 ~ 20004940 (-) True G13615
TU16939 lncRNA upstream 617597 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 770101 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 788736 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 897184 20595329 ~ 20598765 (-) True G13789
AMCG00016426 mRNA downstream 161316 19460293 ~ 19498100 (-) True AMCG00016426
AMCG00016425 mRNA downstream 203559 19446554 ~ 19455857 (-) True AMCG00016425
AMCG00016423 mRNA downstream 221676 19427455 ~ 19437740 (-) True AMCG00016423
AMCG00016424 mRNA downstream 252477 19378000 ~ 19406939 (-) True AMCG00016424
AMCG00016418 mRNA downstream 283820 19366084 ~ 19375596 (-) True AMCG00016418
AMCG00016427 mRNA upstream 39149 19737294 ~ 19757848 (-) True AMCG00016427
AMCG00016435 mRNA upstream 118976 19817121 ~ 19857504 (-) True AMCG00016435
AMCG00016436 mRNA upstream 163309 19861454 ~ 19865695 (-) True AMCG00016436
AMCG00016434 mRNA upstream 171548 19869693 ~ 19871302 (-) True AMCG00016434
AMCG00016433 mRNA upstream 174472 19872617 ~ 19874894 (-) True AMCG00016433
TU16556 other downstream 554035 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 2798237 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 2798237 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 2798237 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 4867447 14790203 ~ 14791969 (-) False AMCG00016293
TU16905 other upstream 437052 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 3756947 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 4001004 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4612892 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4612892 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile