RNA id: AMCG00016433


Basic Information

Item Value
RNA id AMCG00016433
length 1809
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00016433
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19872617 ~ 19874894 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACAAATGGGAGGACATTAACAAAGGGTTTACTTAGTGACATTATTTAAAGTCTGACACAGCTCGGGGGGTGGGGGCGCTTTACAGATGTCTTCAAAGCACTTCTGTAATGAGAGGCCTGCGTTTATAACCCTCAATAAACGTGCTCCCCGGATGCCATTCAGATGCTCGAGTTAAAAACCAGTTTGGCAGGATGTGCCGCCTTCACTGAGCTCTGTGTCAGTCTTAACAGTGCTGCcgtttctgttatttttattgtacaccGAAGGGATTATTCAACAGTGGCACTGCCATTATAACTGgggtactatatatatatatatatatatatacacacacacaaactggacAAGGAGTCTACGTCATTGCAAACTGATCGAATAAGATCGAAGTTCGTTTCTTTTTACTAACTATTGGCCAATGGCGGCTCCCATGCTACTGTCAGTGTGGGTGCTGCTGTCGTCGGGCGGTGTCTTCGCCTCAGACCGCGCTTCCTCCCCGGGGTTGAGCTCCACACGCTCCGCCTGCAAGCCGATCCCCGACACGCTGGGCTTGTGCCGCGGCGTGGGCTACCCGCAGATGCGGCTCCCCAACCTGCTGGGCCATCACACCGTGAGAGAGGCGCAGCAGCAGGCCGGCCCCTGGGTGCCACTGCTGGCCAAACAGTGTCACCCCGACACCAAGATGTTCCTGTGCTCCCTCTTCGCGCCGGTGTGCTTGCTGGAGCTGCCGGGACCGGTGCGGCCCTGCCGGAGCCTGTGCGAGGGGGTGCGGGCCGGCTGCCTGCCCGTCATGAGCGCCTTCGGCTTCCCCTGGCCGCACATGTTCAACTGCAGCCAGTTCCCCGCCGGCAGCGAGGTGTGCATCCCGCCGACGGGCCCCCGGGCCAAGGACAGCGGCGCACCGCACCATAATGACACGGGGACGGTGATGTGCGATGCTTGCAGTGACTCGGAGCCGGAGCTTCAGCGCAGGTACTGCCACAGTGACTTTGCAGTGAGGCTGCGAGTCAAAGAGACATCCTCGGAAGGGGCAGATAGAAGGATTGTTGCTCACGGCCGCAGCCGGGTCCTGTTGCGCCGAGGTGACCGCGCAGAAGAGGAGGCCATGGCCCGGAGCGACCTCTGGCTGGAGGAGGGAAGCAAGTGCGCTTGCGAAGAACTGGATCATTACTCCTCTGGCACCATCCTCGCCTTGGGGAACAAGGTGGAAGGCAGGCTGATGGTCTCAAGGATGCTTCTTTGGAAACGGGCAGATAAGGAGCTGAGGAAATTCATAAGGAGTCTGCAGAAATTAGTCTGCTGAATGTGgggcttttgtttgtgttgggaAAATGTGTATGGAGAGGGGGGGAGGCACACACTGCAAGAAAGCTTCTTTTAAGTGATTCAATGTACACATTGTGTGCACTATCATTAGGTAGAATACCTATATAGAAACAATTACTTTGGTGTAGCGCATACCCTAAGTTTTGTAAATAATGATGTCAATCAACCAATAGGGTGGACTAAGGTTGAAGATGGGGAGTAACTGCTCAAGGTTTACTGTAGCGAATATTGCATGTTGTCTTTCTGTAAGCTGCACCAAGAACCACAAAGAACTGGATAATATCAACAGCTGTGAGAAACAGACCTTTGAGTCAGCAAATCTGTTCTTCTTTAATTGAACCTGTCCCTGTATATCaatatgtttcttttcatttttattaaacctgaaaaaacaaataattcaggCCTGGGACTGGGTAGCCTTCTGTAAAGATcctgttttttgtaataaaacaataaaagttaCTATTCATAAACAATA

Function

GO: NA

KEGG:

id description
K02222 SFRP5; secreted frizzled-related protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16616 lncRNA downstream 614060 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 615698 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 619203 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 783985 19088224 ~ 19088632 (-) True G13366
TU16528 lncRNA downstream 794794 19077368 ~ 19077823 (-) True G13341
TU16865 lncRNA upstream 128255 20003149 ~ 20004940 (-) True G13615
TU16939 lncRNA upstream 440848 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 593352 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 611987 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 720435 20595329 ~ 20598765 (-) True G13789
AMCG00016434 mRNA downstream 1315 19869693 ~ 19871302 (-) True AMCG00016434
AMCG00016436 mRNA downstream 6922 19861454 ~ 19865695 (-) True AMCG00016436
AMCG00016435 mRNA downstream 15113 19817121 ~ 19857504 (-) True AMCG00016435
AMCG00016427 mRNA downstream 114769 19737294 ~ 19757848 (-) True AMCG00016427
AMCG00016428 mRNA downstream 174472 19659416 ~ 19698145 (-) True AMCG00016428
AMCG00016437 mRNA upstream 5377 19880271 ~ 19881825 (-) True AMCG00016437
AMCG00016440 mRNA upstream 94698 19969592 ~ 19979924 (-) True AMCG00016440
AMCG00016444 mRNA upstream 131029 20005923 ~ 20007711 (-) True AMCG00016444
AMCG00016445 mRNA upstream 142486 20017380 ~ 20031020 (-) True AMCG00016445
AMCG00016442 mRNA upstream 156537 20031431 ~ 20040137 (-) True AMCG00016442
TU16556 other downstream 767236 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3011438 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 3011438 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 3011438 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 5080648 14790203 ~ 14791969 (-) False AMCG00016293
TU16905 other upstream 260303 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 3580198 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3824255 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4436143 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4436143 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile