RNA id: AMCG00016435


Basic Information

Item Value
RNA id AMCG00016435
length 6928
RNA type mRNA
GC content 0.50
exon number 29
gene id AMCG00016435
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19817121 ~ 19857504 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAGGGACACGTATCAGCCGCAACACAGCGGCCTGTGCCGACCTGGGAGCTGCAGTATCACATTACACTCAAGAGTACACCCAGTCCCCCCAACACGTCTACAGGTTGATGATGCATTATGATGTCTGCAAATTCAGCCCCACCTATAGTGCTCCCTGGGACGCCCTTTCAGAATTGAGTTCCACGCCACGTTCAGAACCTCTGAGGTTCTCGCAGCACACCCCATACCTCCACCCTGATATGGTCAAAGAAACGGCATTGGTATTCCAGAAACACGTTCACACCTACAGAATTCTGCCAGATGAAGAGGGCTTCCTCGCAGTACAGACCTCTCAGGGTGTCCAGCCGAAGCGCTTTAAGACCCTGCCCGAGCTCATCCAGCTGTACCTCCAGCCCAACCAGGGTCTGGTCACGACACTGCTGTTCCCTGTGGAGCGAGAGGAGAGCCTCGAGGACAGAGACTACTCTGACGGGGAAGATGACAAGCCGCCCCTCCCGCCGCGCACCGCTGCTGCGAATGGGCTGAGCACCATTTCCCACGAGTATCTGAAGGGCAGCTATGCTCTGGACTTGGAGGCCGTGAAACAAGGAGCCAGCAACTTGCCTCACCTCAATAAGACTCTGGTGTCCTCCTGCAAACGTCTACATGGGGAAGTGGACAAAGTCCTAGCTGGTCTTGAGATTTTGTCCAAAGTATTCGACCAGCAGAGTGCACTCATGGTATCACGGATGATACAGCAGTCTGGGAATCAGGGTGGAGACCAGGAACTGGAACACCTCGTGACCAAGCTTTCCATTCTGAAGGACCTGCTGTCCTCCATTGAGAAGAAGGCTTTAAAGGCACTCCAGGACATGAGCCTTACTGCCCCCTCCATCCCTGCCATGCTCTCCACCCGGCACAGCAAAGTCATTCCCATCCAGGCCTTCGAGGTGAAGCTGGATGTGAATCTGGCAGACCTCACCAAGATTGGCAAGTCCCAAAAGCACACGCTGAGCGTGGATGTGGAGGGGGGCAAGCTGGTGGTGCTGAAGAAGCTAAAGGACTCCCAGGAGGACTGGAATACCTTCACTCACGACAAGATTCGGCAGCTGATCAAGTCACAGCGGGTGCAGAATAAACTGGGCATCGTGTTTGAGAAGGAGAAGGACAAGAGCCAGCGCAAGGATTTCATTTTTGCCAGTGCCAAGTGCATGGGTTCCTGGGTCTTGTCCAAGGGCCTGGGGAAGACGCTGGATGAGATGACGGTCACCATCCCCCATGACATCTATGTGTTCGGCACACAAGAGAACTCGGTCTGCGATAAGGAGTGGGTGGAGGCCCTCCGCGCGGCACTGAAGGAATGCACTGAAATGGACTTTAAACCGattgCTGTCCAGACTCTGTGGAACATAAAGATTGCAGTTCTAGTAAAACCAGAGCACGAGAACCGCATAAGCCATGTGGGCATGTCTAGTGTCAAGACTGGGATTGCCAACACGCTCGGCAACAAAGGTGCTGTCGGTGTCTCCTTCATGTTTAATGGAACATCCTTTGGGTTTGTAAACTGCCACCTGACCTCGGGCAACGAGAAGATTGCAAGACGGAACCAGAATTACCTTGACATTCTCCGCCTCCTGTCTCTGGGAGACAAACAGCTCAGCTCCTTCGATATCTCACTGCGATTCACTCACCTCTTCTGGTTTGGGGACCTCAACTACAGGCTGGATATGGACATACAGGAAATCTTGAACTATATCAACAGGAAGGAGTTTGACCCTCTGCTGAAGGTGGACCAGCTgaacctggagagagagaaaaacaaagtgttCCTGCGATTTGCCGAGGAGGAGATCTCATACCCTCCCACCTATCGCTACGAGAGAGGCTCCCGAGACACCTACGTGTGGCAGAAACAGAAAGCAACTGGGATGAGGACAAATGTTCCTTCCTGGTGTGACCGGATTCTGTGGAAGTCCTACCCAGAGACCCATATTGTTTGCAACTCTTACGGCTGCACAGATGACATTGTCACAAGTGACCACTCTCCCGTATTTGCTACCTTTGAGGTGGGGGTGACATCCCAGTTTGTTTCCAAGAAAGGGCTGCCCAAGTCCTCTGAGCAGGCCTACATCGAGTTTGAGAGCATCGAAGCCATCGTCAAGACAGCCAGTCGCACCAAGTTCTTCATCGAGTTCTACTCCACCTGCCTGGAGGTGGGTTGGTCATCAAAGCAACTGACAACGCTGAAGCCGATCCTCTCCGAGATCGAATATCTCCAGGACCAACACCTGCTGTTCACGGTCAAGTCACTCGACGGCTATGAATCCTATGGGGAGTGCGTGATCGCGCTGAAGTCCATGATTGGCAGCACCGCCCAGCAGTTCCACACCTACCTCTCGCACCGGGGTGAGGAGACGGGCAATATCCGCGGCTCCATGAGGGTGCGCGTGCCATCGGAGAGGGTGGGCACTCGGGAGAGGCTCTACGAATGGATCAGCGTGGATAAAGATGAAACTGGATTGAAGGGAAAACAGTCTATCAGCTCCAGGCCGGGCCATGATTACGTCAAACCATCCGTGCGCAAACACCAGCAGAGCGAGCCACTGGGCAAGGTGTGTGAGGAGAGCGAGAGGAACCCCTCACACACCGCAGGGCGTCCCGGCTTCCCCCTGCCCTCCACCCCCAAAGAGGAGAGCACGCAGCCAAGGGCCAAGCAGGACTCTGAAGGGGACCCGTCCAACAGCAGGAACAGCTACAACAACCCGGCCTACTACATCCTGGAAGGCGTGCCAAACCAATCGGCTGCTCTGTCCTCGGACATACAACCTGGGTCAGCCCTTCCGCCCATAGCCTCCAAAGGAGCCACCTCAAGCAAAAGCAAACCCCCCAGCGGTGGGACggcccagcagcgcaggcagACATCTGGACGCCCCCCACGCCCCGTGAGTGAGGAACTGTCCTCGGAGGAAGATGGGAACCCGGGAATGCTGGGTGGGACCCTGAACCGCCCCCCGCCAGACTTCCCTCCCCCGCCCCTCCCGAAAGGAGCTGTGGAGATGACGGAGAACCCTTTCTACGCCTCCAGCAAAGACGTCAAGTCGAGGAGCCTCTACCCAGACTTGGCGGACATCAAGATCCCCGCCAACACTAAGGCTTTACACTCCCCGGGGTTTCTGCCTCCGGCCTCTGGTGGGGGAGGCGGGGCTTTCTGCCTGGACCCCCCTCCCACTGCCCAGGGTGCCCCATTCCGGAGAGGCGGGGGCGGTTCTGGCTTGGATGACCAGTCCTGCTCCGTCCTCCAGATGGCCAAGACTCTGAGTGAGGTGGAGTACCAGCCCGGTCGGGACAGGAACGCCCCCGTCCCACACAAGGGCATGGGGCCCCCTTCTCTGAGGGGCATGGGGCTCCCCGAGTCCTGCCGCACCTTCCCACCCCGCTCCATCCAGGAGAGCATTGCAGAGGACCTGCCTGAGGAGGGCTGCTGGCAGGGGGGCAGCAGTAGCTCCAGTCTGTCAGTGGAGTCCAGTGTGGGCGAGTGGCTGCAGAGACTAGGTCTGGAGCGCTACGAGGAGGGGCTACTGCACAACGGCTGGGACGACCTAGAGTTCCTTAGTGACATCACAGAGGAGGACCTGGAGGAGGCGGGCGTTCTGGACCCCGCCCACAAGCAGATCCTGCTGGAGAgtctgaagcagcagcagcagcagaaataGCTCCATTAGTGCCGTCCCTCTCGCaggaattgcactgtatttttgagATGAACATTTTAGTACcagaaagatttttttaaatttcctttcaatgttattattaatacaccTTTAAGCAACATTAATCCCTCACCACTACATGTCCCCCCagccatatttttatttggcctTCATTTTTGTGACTTTTGATTGATGCCTTTGAAGGAGCTGCAGAATGGGTGTCCATCCCAGAGACACTGCCGCTGCATCGCTGTGCTCATTCTGGAGGCAGGGAGGTTGTGATTTCTGTATTGTAAGTGTTGTTTTAAAGGGAAAGGGTTAAACCAaatgtgtggtgcagtgtgtgaGGCAGACTGTGCTGCGTGCATCCCTGTCCAGCGCTGGTCTGGGGAtgggctttgtgtgtttgttggagATCTGAGGACTGAATCTCACACAGCCACTGCCTGTCCTGACTCAGTGTGCAGACTAAGTGGTTCCCCACATTTCTCCTCTTCCATAGATGTCCAATGTAGTTTTCCCTGGGAGCCCCATATCAGACTCACCGTCTCACTGCAGACCTGGCTAGAGCTGCGAGGATTGAAGCCAGACCCAGTGTAGACCGCAGAATACTTCTCCAGCTCTCCTGGACTTACTGATCTGATGCATTTCGGATATTTCCTATTAAGTTAGTATTTATTCAGAGTTTAGTGTtatgtcatttaaaacatttcaaagtaagtgtttctttttcttcaggaGATGCACTGAAGTCCTTTACGGAGACCCTGATTTCCTACAGCACTGTGTGCTTTATTGGCCCTCCTAGTTCTGCTACTGTATGTATTCTGCACAGAGTGAGGAGGGCTAATATCTCAGATCATGATACGAAGTGTTGGAGTCCTGTCAGAGGAGAGGCTTGTTGTCGGGAACATCCTGCGAGTTCTGGACGTTTCCTCCAGGGGGGATGAAAACTGACCTGAGGAAAATCCTGCTTGACCTCCAAAACACtataatttatttgatgtatgCATTTAGGAAAGGGGGCATCTTGGGCTGCTAATGATGTCTTTTAGGAAAGGAAGGTTTTTATGCAGTTTTTCTCTTCAGAAATATTCTGTGTGGTCTGGATAATTCATAACCCACCCACTCTTTTTGTTCCTCCTCTCTTCAGGAGGTAGTAACTGCTCTTGAATGACCTTAAGAAACCCAAACTAGGTTTGAACCAGGAAGCCTAAAACCTATAGAATGATTTCCAAACAAACTACTAGTAACCCAACGCAAAAAGCTGGATTCCTGATGGGGAATCCGAGAAGTCATGGGGAAGCGGGGGTCATTAAACGGCAAGCTGCTTGAAGGGGCAGACAGGTTAAGCTCCAGTGTGCGCACCCTATTCATCCATCTTCTGATGCAAAAACTAGGACTTGCCTGAATGGCAACAAAGGGTGAACATGTGCAAATCTGGAAAAGATCCAGGCATCCGCtggcctttttttaaatgtatcattgcAAAAGTCTCTGAGGCTTCCTGTATGCTGGTCCAATAATCCGTCCAATTGCCGCTAGCCATTTGTCCCCGTGCTTACGCCTGGTCAGCATGTTCTCTAGAGGCTGAATTTGAAGAGGGGTACATATAATCTCTGTGCCAATATGCCTCCATAATATCAGGAGGCAAATCAGGTTCTCAATCTGTCTCTTGTAACCTCGGctcattttatttcacactgcCGAAAGTGAACTTGCTAAAACCCCTTTGTTTCACTTCTCTTAACTTCCAAACCCTTGAGCATCCACCCATTCAGGAGTAGCACAGCAACCCAGTTAATGAAAGCAAAACCGTGTGTATTTTCCTGAGGAtgtgtgtgaaatgcatttatagAAGGGCATTTTCTTAAACAACTATATTTAATGTAGTTGGgtatattttctgttctgttttttttttttttttttttaaggtgatgCATGTACATTTACCATGAACGGTTATAAATggataattaaacaatttaacatGAAGCTTTGCATTCCTTTTACATTCTAATTCATGACCGATGTATTACTGATTCATGCAAACCTTGGACTCTCTGAATCCTCCCGATATTATGCATTGAGCAGCGTTGTAGAGAAGGAGCGCAGTAAGGTACAGGAGCGAGGACCTGGAAGTGGTCCTCCACCCGTCACCCCTCCCTTCGTCTCACTGCAGGAGATTCTCAGTTGATCACCTGATCTTGAGATCATTTGATGCATCGCATGTTAAAAAGGCTGTACGTTGAGTATCCAGGACTGAAGTACCTGTTTTCCATGTGTAGTGATGTCGGTGTAGCAGTCTAAAGATGAAAGATTATGCTGTTCTACAGTGCGAGACTGGAAGGCTGTCCTAACTGTGTACACTGACTTCAAGACACTCCTTTACAGCCATCTGATGTGGAGCAGTGCACCCAACTGAAGGTCTCCTGTGTCTATAGTGCGAAAAGCTCTTGACACCACCGATACCTCAcactaaataattattttactaaacAAGCAAGCCGTTTTGTGCAAACCAAGTCCAACGGCTGCGTGTTTTTTGCGTGTGATTCAATTCTGTTTGTTTCCCTTCTGCTGGCACAATGTCCTCGTTCTTTGGAGGTTATACGTTTGTTCATGAGATTATTGCACTCAATTAGTTTATTCTCTGTACATTGTCTGttcatttgttaaaataattcagaagcCTAAAAGTTGAGATAATGGCCTCCAGTTCGTGTTTAAAAATGGAATCTGCACTTCACAATCAGACGATTCTTCAATCTTTACTGCTGGTGCCAGCGTCCATTTGGTAGCTTTGGTGGAAATGCTAATGGAAACACAAGTGCCTGACATTTGTTAGACTGAGTCTTTTACGTTTTGTATGTTGCCAAATATAATATAGTAACTGGAAAAAATGTTGTGAGCGTCATACAGCAGGTTACTTCTAGATGTTGCATAAAAAAACGAACATAACctcttagtttttgtttttttttagtttttttttcctgatgcttattaaataaatgaaaaatatgttgtaATTTGTCCTAATTTAAGGTTTTAactttttcaaatgcatcacCAGTGTCTCTTTTGGCTTTGTTGAAAATGTGCCAGCAATGTGTTTGTTAACTACAGAGATATTCTCTTCAACAAATATTTCAGGTCCACTGTAAAAAGactcctgttttttgtttagttttttttcaacaaataaaaactaattttcaaCACTTGA

Function

GO:

id name namespace
GO:0046856 phosphatidylinositol dephosphorylation biological_process
GO:0090024 negative regulation of neutrophil chemotaxis biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0007155 cell adhesion biological_process
GO:0030175 filopodium cellular_component
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0030027 lamellipodium cellular_component
GO:0016020 membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K15909 SHIP2, INPPL1; phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16616 lncRNA downstream 558564 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 560202 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 563707 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 728489 19088224 ~ 19088632 (-) True G13366
TU16528 lncRNA downstream 739298 19077368 ~ 19077823 (-) True G13341
TU16865 lncRNA upstream 145645 20003149 ~ 20004940 (-) True G13615
TU16939 lncRNA upstream 458238 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 610742 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 629377 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 737825 20595329 ~ 20598765 (-) True G13789
AMCG00016427 mRNA downstream 59273 19737294 ~ 19757848 (-) True AMCG00016427
AMCG00016428 mRNA downstream 118976 19659416 ~ 19698145 (-) True AMCG00016428
AMCG00016426 mRNA downstream 319021 19460293 ~ 19498100 (-) True AMCG00016426
AMCG00016425 mRNA downstream 361264 19446554 ~ 19455857 (-) True AMCG00016425
AMCG00016423 mRNA downstream 379381 19427455 ~ 19437740 (-) True AMCG00016423
AMCG00016436 mRNA upstream 3950 19861454 ~ 19865695 (-) True AMCG00016436
AMCG00016434 mRNA upstream 12189 19869693 ~ 19871302 (-) True AMCG00016434
AMCG00016433 mRNA upstream 15113 19872617 ~ 19874894 (-) True AMCG00016433
AMCG00016437 mRNA upstream 22767 19880271 ~ 19881825 (-) True AMCG00016437
AMCG00016440 mRNA upstream 112088 19969592 ~ 19979924 (-) True AMCG00016440
TU16556 other downstream 711740 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 2955942 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 2955942 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 2955942 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 5025152 14790203 ~ 14791969 (-) False AMCG00016293
TU16905 other upstream 277693 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 3597588 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3841645 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4453533 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4453533 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018723 False 3083 mRNA 0.55 21 NC_007126.7 47454441 ~ 47479119 (-)
grasscarp (Ctenopharyngodon idella) CI01000218_00119041_00133536.mRNA True 2847 mRNA 0.54 20 CI01000218 119041 ~ 133536 (-)