RNA id: AMCG00016436


Basic Information

Item Value
RNA id AMCG00016436
length 862
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00016436
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19861454 ~ 19865695 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACAAAAACCCAATCAAATACACAGTTGTGGCTTTTCACTTTCAAAACGATAAAATCTAGATCACGCAGGTTTGAGTTTATAGTGCTTTTTTTCAGTCACCTTGACCTTCGGCCGGCATTGTGGATCCCGCACAAGAGCCGGACTTTGCGCCGTCACATGCCGCCCGCGCCTCCCAGGAGCGTCATTTGTGGAGCCCTGCGAGCCACATGCGTGGATCTGCTTTTAAACGCAGAGGATACACCACAGAAGTGCGCTCCCTGGAGGGACAATGCCTGTTGCACGGCCAACACCACAGAGGAGGCGCACGAAGACAACTCGAACCTGTACAACTTCAACTGGAACCACTGTGGGACCATGACACCAGCCTGCAAACAGCATTTCATACAGGACACCTGCTTCTACGAGTGCTCTCCCCACCTGGGGCCCTGGATTGACCAGGTGGACCAGTCCTGGCGTAAGGAACGCATCCTGAACGTGCCGCTCTGCCAAGAAGACTGTGAGACTTGGTGGAAGGACTGCAAACTGGACTTCACCTGCAAAGAGAACTGGCACAAGGGCTGGGACTGGAGCTCAGGTATAAACCAGTGCCCCATTGGAACAAAATGCCAGAAGTTTACAGATATTTTCCCCACACCTCAGAGTATGTGTGAGAAGATCTGGTCCAATTCTTATGCCTATACCACATTCAAGAGAGGCAGTGGCCGCTGTATGCAGATGTGGTTTAACGGGAGTAATCCCAACAAAGCTGTGGCAGAATACTATGCTGCAAAGGCCCCTTCCTCCAACCTTCCTGTGTTTTTGCCTCTCCTCTCAGTGCTCCTGGCTCTGTTTTTGTCATGAATAAAAGCttgtacagaaaa

Function

GO: NA

KEGG:

id description
K13649 FOLR; folate receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16616 lncRNA downstream 602897 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 604535 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 608040 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 772822 19088224 ~ 19088632 (-) True G13366
TU16528 lncRNA downstream 783631 19077368 ~ 19077823 (-) True G13341
TU16865 lncRNA upstream 137454 20003149 ~ 20004940 (-) True G13615
TU16939 lncRNA upstream 450047 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 602551 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 621186 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 729634 20595329 ~ 20598765 (-) True G13789
AMCG00016435 mRNA downstream 3950 19817121 ~ 19857504 (-) True AMCG00016435
AMCG00016427 mRNA downstream 103606 19737294 ~ 19757848 (-) True AMCG00016427
AMCG00016428 mRNA downstream 163309 19659416 ~ 19698145 (-) True AMCG00016428
AMCG00016426 mRNA downstream 363354 19460293 ~ 19498100 (-) True AMCG00016426
AMCG00016425 mRNA downstream 405597 19446554 ~ 19455857 (-) True AMCG00016425
AMCG00016434 mRNA upstream 3998 19869693 ~ 19871302 (-) True AMCG00016434
AMCG00016433 mRNA upstream 6922 19872617 ~ 19874894 (-) True AMCG00016433
AMCG00016437 mRNA upstream 14576 19880271 ~ 19881825 (-) True AMCG00016437
AMCG00016440 mRNA upstream 103897 19969592 ~ 19979924 (-) True AMCG00016440
AMCG00016444 mRNA upstream 140228 20005923 ~ 20007711 (-) True AMCG00016444
TU16556 other downstream 756073 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3000275 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 3000275 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 3000275 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 5069485 14790203 ~ 14791969 (-) False AMCG00016293
TU16905 other upstream 269502 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 3589397 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3833454 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4445342 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4445342 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017505 True 2337 mRNA 0.43 5 NC_007126.7 47341856 ~ 47350232 (+)
grasscarp (Ctenopharyngodon idella) CI01000218_00155323_00156947.mRNA True 820 mRNA 0.49 4 CI01000218 155196 ~ 156947 (-)