RNA id: AMCG00016442


Basic Information

Item Value
RNA id AMCG00016442
length 3195
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00016442
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20031431 ~ 20040137 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCACCCGCATAGACGCTGAACTCCCACGattaatatttaacttgaaataaACATCAGCACTTGTACATCGGCGGGCACATTGTGTAGCAAAACCATCACGGAAACATAAGATCATGTATAATCTGTAATTTGGGGAATGCCAATCTTGTTAAGATGTCTGTTTCTCATGCCAAAGACGAGTCTGTCCCGCGTCCAATCAAACTCGGCCAAATGTCAGAAAGTCGGAACTGTTGGCAGCATCGCTAGTGGCTCAGACTCAGACTCTGGTCCAGGCTGGTCTGTAGACACTATGATTGTACTGAGCCGCAGTGCCATCATGGTCGTCCTGGGCTTGATTTTAGCCTCGggatgtgtgcatgtgtcttaTTGTGAGGGCACCCAAGATGAAGTTATTAGCCCTGCCATGTCTGTTATCTGGGGTGCTGGACTCCAACCCAGAGTTGTCCTGCCTGTTCGATACTTCTACATCCAAGCCGTGAGTCCCACTGGACAAAACCTCACCTATTCTCCAGGAAAAGAAGCTTTTGTGGTGAGAATTTCCTCTCTGTCACCTAAGGAACACATCCGTATCCATGTGCCAAAGCCCTTGGACAGAAATGATGGCTCATTTTTGATGAGGTACCGTCTGTATGGCAGCGCCAATCAGGGCCTGAAGATTGAGGTGTTACACAGGGATAAGCCTGTTGCAAAGTCCCCATACATCTTAGAAGGGCCAGTATATCATGAGTACTGTGACTGTCCAGAGATGGACCCCCAAGCGTGGCAGACTGCAATGTCCTGCCCTGACCAGGAGCCTCAGATCTCCATGGACTTCGCCAGCTTCCCTCAGATCGACCTGCAGCGTCTGCGCCAGGAGGTCCCAAAGCGCTTCAGCCAGAGAGGGGGACTCATTCATTACACAGTGGTCAACAACCAGGTCTATCGCCAGACCCTGGGGAAGTACACAGACTTTAAAATGTTCTCTGATGAAATACTGCTTTCCCTGACCAGAAAGGTGCGCTTGCCCGATGTGGAGTTTTACATTAACGTGGGAGACTGGCCCATGGAGAAGCGCAAAGTGAACGACACTCCCGGTCCAGTGCCAATTATTTCATGGTGTGGCTCCACAGACACCAGGGACATCGTGGTGCCCACCTATGACATCACACACTCCACACTGGAAACCCTGCGAGGCGTGTCCAACGACCTGCTCTCCCTACAGGGGAATACAGgcCCTCCATGGAGCAACAAGACTGAGCAGGCGTTCTTCCGGGGCCGGGACAGCCGAGAGGAGCGTCTCCAGCTGGTGCAGATGTCCCGGCAACACCCCGAGCTCCTGGACGCTGGCATCACTGGCTTCTTCTTCTTTAGAGAGCGGGAGAAGGAGCTGGGGAAGGCCTCTCTTGTTGGGTTCTTCGATTTCTTTAAGTACAAGTACCAAGTGAATGTGGACGGCACCGTAGCAGCCTACAGGTTCCCCTACCTGCTGCTAGGGAGCAGCCTAGTGCTGAAACAGGACTCCAACTATTATGAGCATTTCTATATACACCTGAAGCCAGGGAAACACTATGTGCCAGTGAAGAGGAGCCTCTCGGACCTCATTGACACGATCAAGTGGGCTAAGGAGAACGATGCTGAAGCAGAACAGATTGCCGGAGCTGCACAAGCTCTGGCCAGAGACCTCCTCCAGCCTAACCGACTGTACTGCTACTATTACATGGTGTTCCAGAAATATGCCGAGCGTCAGACCAGCAGGCCTGAGGTCCACGAAGGAATGGAGCATGTGCCTCAGCCCAGTGACGGGGACTCCTGGTGTACCTGTCACCGGAGCCCACAGGGGAGCTCCCAGAAGAAGGACGAGCTCTGACCCCCAATCTCTCTTCAGAGTCACAGAAGACCGGCACAATTCAGTGGTAAATTATCATTGCCCTGTTGTACCCAAGGGGCtgaaaaatcacattcaatCTCTAGAGGCCTGAAATGTGTCTCGGGTCACCAGTGAAGGGGCAAGCAAGACAAAGGAGACTAATAATAAGCAAAAATAAGCATAACGTAACCAAACCGTTTATTGCTTATTTCCCAATGGAGTTTACTGCAGCCAATCCAGCAACCTGTCTGCTCAGTTAACTAGAATTTGCTGCTTCACATGGAGCAGTAATTTCTCACTCATTCTTGGGATGCAGAGTGTACTGTAAGACCCTTGTGTTCAAGGCTGAGTTATTGTAAGTGTCTTCCATAGTTCtggtaaaaatacatacaaataaggGTTGTTGTTAAACTTGATGTGCCATAAGCTTTTATTTCTTCACAACACTCACCAGGAAGGTACTATACAtcacaaatgttgtttttgtttatggcCCTGAGGCTTGTGAGTTACTACATTTTAGCTATTGAAAACACATGAATGGATAATAGACTTTCATGTAGGTGGAATAGGTAGGTACAATCTTATGGGTGCCGGGGTATTTGTATAGTATGTTTCCAGGTACAAGGTGAGTGTCAAATGGATGAAAATGTTCCAAAGTGGGGCCTTATTTCTGACCCTGAAATGTTGGCTGTAGTCATTGAATGCTAATATTGTGGTAGTGAAAGGATGAGAGAAAATAGCTTTAGGCTTTGCTGCCTGGTTCTGTTTCCACCCTCCCCCCAGAGACGCAGTAACACTCAGAGAATGGAATCACTAGGTGGGAACATGACAACAGTCTTGTGACGTCAGGTGCCACTTATCCTTTCTAGAGAAACTCGGGTGAAGTTTGTTGCAAGTGCAATTACAGCAGCCCTTTCAGAAGATTTTAACGCATAGTAGGAGTGCCTTGCTCTGAACGGTTTGCAGCCCATTTAGGGGAAAAAAGGTACATTTACTGTGGAGCCTGCCACATAGTACAATTCAGTGATTCATCCATACACCACTTGTTATATTTACTCTTTAACCAAGGCTATTGTAAAGACTTAATACATTGAAGAGAATTTGtaaagtttacatttatttaaatgccacTTTCACAGAAATCATATTAAGGTAATTTCTGGATATATCcatgtttgtatttctattcCTCTTGATCGTGTCTTTATATCATTatgagtgaaaatgtttaatggtgcatttgtatttttaatacatttatactgatgttttattttgcacatttttcaaatatttattgcaCAATAGTTGTGAGTTtagtttcttaaataaaaacaatatacc

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16865 lncRNA downstream 26491 20003149 ~ 20004940 (-) True G13615
TU16616 lncRNA downstream 772874 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 774512 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 778017 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 942799 19088224 ~ 19088632 (-) True G13366
TU16939 lncRNA upstream 275605 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 428109 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 446744 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 555192 20595329 ~ 20598765 (-) True G13789
TU17099 lncRNA upstream 590335 20630472 ~ 20636938 (-) False AMCG00016479
AMCG00016445 mRNA downstream 411 20017380 ~ 20031020 (-) True AMCG00016445
AMCG00016444 mRNA downstream 23720 20005923 ~ 20007711 (-) True AMCG00016444
AMCG00016440 mRNA downstream 51507 19969592 ~ 19979924 (-) True AMCG00016440
AMCG00016437 mRNA downstream 149606 19880271 ~ 19881825 (-) True AMCG00016437
AMCG00016433 mRNA downstream 156537 19872617 ~ 19874894 (-) True AMCG00016433
AMCG00016443 mRNA upstream 3213 20043350 ~ 20060165 (-) True AMCG00016443
AMCG00016446 mRNA upstream 31611 20071748 ~ 20082592 (-) True AMCG00016446
AMCG00016447 mRNA upstream 42517 20082654 ~ 20083255 (-) True AMCG00016447
AMCG00016452 mRNA upstream 49432 20089569 ~ 20094925 (-) True AMCG00016452
AMCG00016453 mRNA upstream 88771 20128908 ~ 20135484 (-) True AMCG00016453
TU16556 other downstream 926050 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3170252 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 3170252 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 3170252 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 5239462 14790203 ~ 14791969 (-) False AMCG00016293
TU16905 other upstream 95060 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 3414955 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3659012 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4270900 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4270900 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037816 True 2547 mRNA 0.41 8 NC_007132.7 35041413 ~ 35055277 (+)