RNA id: AMCG00016446


Basic Information

Item Value
RNA id AMCG00016446
length 1188
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00016446
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20071748 ~ 20082592 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAATAGTTGCCTTCTGTATTCCCATCCAtccagcagcacagagagatgTGACATCTACCTTAATCGTTCACCCAGAGACCCCTCTAAATGGCAGCACCCTTGGAGCATTTACCCTGGGCCAAGTGGCTACTCTGACCTGGCTATCATTGATCAACCACGGGGCTTTTACTGCCTGTTTGAATGTGGGAATGGGTAGCTCTACATCAAGCAACAATCCCCAGACAACACCAATGGCCCCACTGAACCAAATCGTGTTCAGTCAGGAGCCCAATGGAGTGACCTACAGAGTCCCGGCCCTTATCTACCTGGAGGAAATCGGCACATTCCTGGCCTTCGCAGAGAAACGCTCCTCACCTGCTGATAGTGATGCCAAATACCTGGTGATGAGGAAAGGAAAGATGAACGGTGAATCAGTTCAGtggTCACCCATGCATGAGCTACAGAGTGTATGTCTACCAGGATATCGCACCATGAGTCCCTGCCCTGtgtatgacaaaaacaacaaaacgcTGTTCCTCTTCTTCATCTGCGTTGATAAAACTGAGAATGAGCAAAAGTGTAGTGGGATAAACGCAGCCAAACTGTGTTATGTAACCAGCCAAGACAACGGCAAGACCTGGAGCAATATAACTAATTTGACAGAGAAGGTGATTGGCCAAAGAGAAAAGGATTGGGCGACCTTCGCCGTGGGGCCGGGCCACGGGGTGCAGCTGCAGAGTGGGAGGTTGATTATCCCAGCCTATGCCTACAACATTTGTGGCTGTAAATGTATTGGGAGTTGCTGTCAATGTAAATGCACACCCAGTTCCTGTATAAGCGGATGCACTTGCTATAAATGCGAATGCACTTGCTGTAATCCCACACCATTTGCCTTCTGCATTTATAGAGATGTAGGGCAGGAATGGAAGATGGGAAATCAGATGCCACGGTCACAGTCACTAGAGTGTCAAATGGCAGAGGTTCTTGACCACCAGGGAGGGAAGTATTTGTACTGTAATGCCCGCACTAAGTCAGATTACagggtagaagctgaaagtaaGAACGCAGGTGAAGATTTTGAAGAGAAGAAATCAAAACTAGTGGATGTGAAGAAATCTGGTTGCCAAGGCAGTGTTATTAGCTTCCCTAGGAATGATGGGAATAGTGGGCTTCTGTATTCCCATCCATCCAGCAGCACAGATAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16865 lncRNA downstream 66808 20003149 ~ 20004940 (-) True G13615
TU16616 lncRNA downstream 813191 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 814829 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 818334 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 983116 19088224 ~ 19088632 (-) True G13366
TU16939 lncRNA upstream 233150 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 385654 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 404289 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 512737 20595329 ~ 20598765 (-) True G13789
TU17099 lncRNA upstream 547880 20630472 ~ 20636938 (-) False AMCG00016479
AMCG00016443 mRNA downstream 11583 20043350 ~ 20060165 (-) True AMCG00016443
AMCG00016442 mRNA downstream 31611 20031431 ~ 20040137 (-) True AMCG00016442
AMCG00016445 mRNA downstream 40728 20017380 ~ 20031020 (-) True AMCG00016445
AMCG00016444 mRNA downstream 64037 20005923 ~ 20007711 (-) True AMCG00016444
AMCG00016440 mRNA downstream 91824 19969592 ~ 19979924 (-) True AMCG00016440
AMCG00016447 mRNA upstream 62 20082654 ~ 20083255 (-) True AMCG00016447
AMCG00016452 mRNA upstream 6977 20089569 ~ 20094925 (-) True AMCG00016452
AMCG00016453 mRNA upstream 46316 20128908 ~ 20135484 (-) True AMCG00016453
AMCG00016454 mRNA upstream 63221 20145813 ~ 20146301 (-) True AMCG00016454
AMCG00016455 mRNA upstream 173044 20255636 ~ 20282317 (-) True AMCG00016455
TU16556 other downstream 966367 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3210569 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 3210569 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 3210569 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 5279779 14790203 ~ 14791969 (-) False AMCG00016293
TU16905 other upstream 52605 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 3372500 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3616557 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4228445 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4228445 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile