RNA id: AMCG00016473


Basic Information

Item Value
RNA id AMCG00016473
length 1834
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00016473
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20393597 ~ 20398749 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTTCAGCCGGCGACGCAGCGAGCCCGTCCTGCATGTAATCTGTTCACACAGGGGTCAGGATCCCAGACTGACTGTGGAGGAAAAACTCCTGGGAAACGAATGAAGAAACACCTCTTGCTTCTCTTCACATACAGAGGACTCGtgagaaaagggaaaaagagtaaaagaagaaaatggccAATTTTATATTACGGAAAGCGGAACCCAGTGACGTGTCGGACATACTGCGCCTCATAAAGgaaCTGGCTAAATTCGAAGAAATGGAAGATCAAGTGAGATTGACAGAGAAAGAGCTGCTGGAGGATGGCTTCGGGGATCACCCTTTCTACCACTGCGTGGTGGCAGAAGTGCCCAAGGACAAGCAGTCCGCCGAGGGTTACACCGTCGTAGGATTTGCCATGTACTACTTCACCTATGACCCCTGGATTGGAAAACTGCTGTACCTGGAAGACTTCTACGTAATGAAGGAATTCAGAGGATACGGAATCGGGTCCGAAATCTTGAAGAACCTGAGTCATACGGCCGTGAAGACGCGGTGTAGCGGTATGCACTTCATCGTGGCCGAGTGGAACAAGCCGTCCATCGAGTTCTACAAGCGGCGCGGCGCCTCCGACCTCTCTCTGGAGGAGGGCTGGCGGCTCTTCGAGATCGACAAGGAGTACCTGCTCAAGATGTCCGCCAAGTAGAGTGCCTGACGGGAGCAGTCTGACACACCTGTGGCTTtcggtttttttgttttttgttttgttttgttaaaatgtaatttaactttCATAATTAAGAAGTTGTGATAGTACTGTAtgcctgctttaaaaaaacaactgatttGATGtatactaatacaaaaataaaagctattACAATTAATGCTGTTGGGACCTTTGACTCATGTTACCTAGCCCAGGGTTTAATATAACGTGATGAAACGGTTATTGAACCAATCCTGTATTTGGTAGACCTCCAGCGtggattttttcttttgcagggTTTTAGAAAATTGTTAGAAAGGCCTGAGAGAGTGAACCCTCTGCTCTAGGCTCCCAGGTCAGGGCTCTTAAtcatactgatacacacatgTAGGAATTGAGCTGGTGGGTTTGATTAAATCGCAAAGAATGACATATCCTTGCTCCTATGGTCATGTCAACATCGTGTGAGGAACTGAGTCATGCCAGGAATGTGCCGGGCGAGAACCAAGCGTTTCTGGTTCGTTCTGGCCGTGAGCATCAGAGCACAGCGGGGCATTGCTCACTCGCAGGTTCTCGGGTTCCTGTTTGAACAGAAATTCAGCGGCAGTCTCGTGACTCTCAAGGAACTAGTTCATTCTGGGATTACAGACTCGGTTCATGAATACCACTTCCTTCCTCACATTCTGGCAATGAGAAGTGCTGTGATGGATTTCCCGTGTCATTGTTACAGTTGGCTTTTATAGAGGGGGGAGGGTGGCAGATCAGACACAACCGAGTCATTCTGACCTTATTACTGATTACTGTACTTGTCATGTACCATGCAACATGATGTGCAGTACCTTTAGAGTAGTTTAggaagatttttcttttctttaaatatcttCTTCCTTTTTGCTATACAAAGAATCTGTTCCTTTTTTCCTCATGATTTCCAAAACTGCAGATAGCCGAGAGCAAGCGATCAGTCCTGTGTCACAGAAACGCACAAAGTGGTTTGTGTACACAGACAGAAAAGGTTAATGCACTCAGTTGTCTAGAGCAGggttttgcaaacatttttcacTCATCCACGAACAAAACGCATcagcatacatatatacagctctgggaaaacttaagagaccactgcaaatttttcttaaat

Function

GO:

id name namespace
GO:0004145 diamine N-acetyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16939 lncRNA downstream 77018 20315742 ~ 20316579 (-) True G13680
TU16865 lncRNA downstream 388657 20003149 ~ 20004940 (-) True G13615
TU16616 lncRNA downstream 1135040 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 1136678 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 1140183 19165586 ~ 19253414 (-) True G13392
TU17050 lncRNA upstream 69497 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 88132 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 196580 20595329 ~ 20598765 (-) True G13789
TU17099 lncRNA upstream 231723 20630472 ~ 20636938 (-) False AMCG00016479
TU17108 lncRNA upstream 248087 20646836 ~ 20652268 (-) True G13806
AMCG00016460 mRNA downstream 14465 20372554 ~ 20379132 (-) True AMCG00016460
AMCG00016464 mRNA downstream 31387 20357233 ~ 20362210 (-) True AMCG00016464
AMCG00016461 mRNA downstream 38473 20342080 ~ 20355124 (-) True AMCG00016461
AMCG00016459 mRNA downstream 54554 20334888 ~ 20339043 (-) True AMCG00016459
AMCG00016462 mRNA downstream 90523 20292302 ~ 20303074 (-) True AMCG00016462
AMCG00016472 mRNA upstream 2639 20401388 ~ 20405776 (-) True AMCG00016472
AMCG00016470 mRNA upstream 23205 20421954 ~ 20425750 (-) True AMCG00016470
AMCG00016471 mRNA upstream 42796 20441545 ~ 20447031 (-) True AMCG00016471
AMCG00016477 mRNA upstream 108099 20506848 ~ 20510468 (-) True AMCG00016477
AMCG00016476 mRNA upstream 119050 20517799 ~ 20523757 (-) True AMCG00016476
TU16905 other downstream 258050 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 1288216 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3532418 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 3056343 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3300400 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 3912288 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 3912288 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 4482399 24881148 ~ 24882098 (-) True G14305

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000171_00822608_00823794.mRNA True 888 mRNA 0.47 5 CI01000171 822412 ~ 824057 (+)
rainbow trout (Oncorhynchus mykiss) TU1081635 True 1139 lncRNA 0.44 6 NC_048575.1 16405167 ~ 16408397 (+)