RNA id: TU17110


Basic Information

Item Value
RNA id TU17110
length 839
lncRNA type sense_over
GC content 0.41
exon number 1
gene id AMCG00016480
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20666142 ~ 20683024 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGTGCCTATCCCCGTTCCCGAACCCGGGGCCGGAGCCGTGGCCGGGGCCATGCCTGTGTCTGGAGGGGCCGGAGCGGGGGCCGGAGCGGGGGCCGGTGTCGGAGTTGGAGTCACGGCTGAAGCCGGCTGTCAAGAGGGGACCACCTACGTGTGCTCGGTCTGCCCTGCCAAGTTTGACCAAATCGAGCATTTCAACGATCACATGCGCATGCATGTCTCGGATggataagtaaaaaaaaaaaaaaaagaaaaaaaaaaaagaaacttaaaacttctttagaaaaaaaaaaaaaagaaaatggcactagattttttttttcttattttggggCATGAAGAGTTATGAGTATAGACACTGGCACATTACGTTTCCCAGAGACAAGATCCTTTTTTTTGGtattcttaaagaaaaaaaaaaaaagaaaaaaaaataagatggtGGCCTTAAGGCTATGTAGTTTGCTAACGATCCACTGGCTGGATCCTTACTACAGGCCTCTAAATGTATGCTTTCTTCTAATACTGGTTTATGTGTTGAACACTACAACAAGGCCTACTATCTCTAAAAagcaaacacatatatacagtgaaaattaacaaaagTAGATATGTTCCCATTCAGACCGTTTTGGACACTATAATAGTCCATGCTAACTGTGGTATACAGGCCTCTTTTGAAAAGTACCTGGTTTGTACTTTGTAATCATTCTAATGTAATGATGGTCACAAGTTTGCCTTTTATATATAGGATATGAAAAGGAGTTATTATGACACTgggttattatttattgtaatggtATGGAGGGATTCAAATGCAGCTGTCATTAGGTACAAGac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17108 lncRNA downstream 13874 20646836 ~ 20652268 (-) True G13806
TU17099 lncRNA downstream 29204 20630472 ~ 20636938 (-) False AMCG00016479
TU17088 lncRNA downstream 67377 20595329 ~ 20598765 (-) True G13789
TU17050 lncRNA downstream 152738 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA downstream 174121 20486881 ~ 20492021 (-) True G13766
TU17114 lncRNA upstream 94443 20761423 ~ 20761693 (-) True G13812
TU17121 lncRNA upstream 240938 20907918 ~ 20908118 (-) True G13819
TU17178 lncRNA upstream 1115084 21782064 ~ 21782296 (-) True G13860
TU17179 lncRNA upstream 1118264 21785244 ~ 21785716 (-) True G13861
TU17202 lncRNA upstream 1474973 22141953 ~ 22142185 (-) True G13884
AMCG00016479 mRNA downstream 29182 20616509 ~ 20636960 (-) True AMCG00016479
AMCG00016476 mRNA downstream 142385 20517799 ~ 20523757 (-) True AMCG00016476
AMCG00016477 mRNA downstream 155674 20506848 ~ 20510468 (-) True AMCG00016477
AMCG00016471 mRNA downstream 219111 20441545 ~ 20447031 (-) True AMCG00016471
AMCG00016470 mRNA downstream 240392 20421954 ~ 20425750 (-) True AMCG00016470
AMCG00016481 mRNA upstream 257000 20923980 ~ 20973210 (-) True AMCG00016481
AMCG00016483 mRNA upstream 320012 20986992 ~ 21012361 (-) True AMCG00016483
AMCG00016484 mRNA upstream 407114 21074094 ~ 21245418 (-) True AMCG00016484
AMCG00016485 mRNA upstream 1021831 21688811 ~ 21709689 (-) True AMCG00016485
AMCG00016486 mRNA upstream 1243890 21910870 ~ 21921639 (-) True AMCG00016486
TU16905 other downstream 530595 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 1560761 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3804963 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 2788112 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3032169 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 3644057 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 3644057 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 4214168 24881148 ~ 24882098 (-) True G14305

Expression Profile