RNA id: AMCG00016487


Basic Information

Item Value
RNA id AMCG00016487
length 1304
RNA type mRNA
GC content 0.36
exon number 2
gene id AMCG00016487
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 22017124 ~ 22020731 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTATTGTCTTTTCTTGGTAATGCAGCGCTGATTATCACTATTAAAACAGGCAGCAGTTTGCACTCTCccatgtatgtattaatatgtatgaATGCCTGTGTAGACCTGACTTTGCCAATAATATTCGTACCAAAAATGTTattaagttttttatttaacttgagTGGAATAACTCTGTTGGGTTGtctcattcaaatgttttttatccACTTCATTGGTAGTTTTCAGTCAACTGTTCTCCTAGGGATGGCTCTGGATCGCTATGTTGCCATATGTATCCCACTGCGCTACAATGATTACATAAATACGTCGACTTTCTGTAAATTCTCTGCTGTAGTTATTTTGagaaatttattttttgttttacttatagTAGTTCTAGCCAGTCCTCTATCTTTTTGCTCATCGAATGTTATTGATGATTGCTTTTGTCAGCACATGGCTCTTGTAAGCTTGGCCTGTGGAAACACCTCCAAGAACAGTATTATTGGGCTGCttgcaatatttttaataattgtcaCTGATGCTGTGCTCATTGTGATTTCATACATGAAAATTttctttgatgtttttaaaacacactcaGGAAAATCCCGTGAGAAAGCAATCCACACCTGTGGAACTCATTTAATAGTCACAGGGGTGTCTTTCACCTTTAACATGTTTGCATTACTTTCATACAGATTCAAAAATTCTCTCCCTCCTAATATTCATAACTTAATAAGCATAATGTACTTACTTTTCCCGAGCACTCTCCACCCTATTATTTATGGAATAAGAACAAAAGCAATAAGAGGGCAGATGCTGAAACTATTTCAATGCACAACAATTGGACCCATCTCCACAAAAGTATCGAATAACAGTGCTATTTCAGCAGAGGTGAAAATGCAGCAAAATCAAAGTGGAATTACATCTCATACAGAATTTCTACTACTTGGATTTCATGGACTCGGAGAATTCAGACGactgctttttcttcctttttctctgATGTTTGTATTGGCTTTTGTTGGTAATGCAGCACTGATAATCACTATTAAAACAGGCAGCAGTTTACACTCTCCCATGTATGTGTTAATATGTATCAATGCCTGTGTAGACCTGACATTGCTAATTACATTTGTCCCGAAAATGTTATTAAGCTTTTTATTTGACTGGAATGGAATAACTCTATTGGGTTGTCTcatccaaatgttttttgtccacTTTGTTGGTAGCTTTCAGTCAACTCTACTGTTAGGGATGGCTCTGGATCGTTATGTTGCCATATGCATCCCACTGCGCTACAATGATTACATACAT

Function

GO:

id name namespace
GO:0050896 response to stimulus biological_process
GO:0016020 membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17179 lncRNA downstream 231408 21785244 ~ 21785716 (-) True G13861
TU17178 lncRNA downstream 234828 21782064 ~ 21782296 (-) True G13860
TU17121 lncRNA downstream 1109006 20907918 ~ 20908118 (-) True G13819
TU17114 lncRNA downstream 1255431 20761423 ~ 20761693 (-) True G13812
TU17110 lncRNA downstream 1350144 20666142 ~ 20666980 (-) False AMCG00016480
TU17202 lncRNA upstream 121222 22141953 ~ 22142185 (-) True G13884
TU17205 lncRNA upstream 151819 22172550 ~ 22172940 (-) True G13887
TU17211 lncRNA upstream 169185 22189916 ~ 22226828 (-) True G13891
TU17214 lncRNA upstream 215440 22236171 ~ 22236399 (-) True G13893
TU17216 lncRNA upstream 339783 22360514 ~ 22360776 (-) True G13895
AMCG00016488 mRNA downstream 64931 21949268 ~ 21952193 (-) True AMCG00016488
AMCG00016486 mRNA downstream 95485 21910870 ~ 21921639 (-) True AMCG00016486
AMCG00016485 mRNA downstream 307435 21688811 ~ 21709689 (-) True AMCG00016485
AMCG00016484 mRNA downstream 771706 21074094 ~ 21245418 (-) True AMCG00016484
AMCG00016483 mRNA downstream 1004763 20986992 ~ 21012361 (-) True AMCG00016483
AMCG00016497 mRNA upstream 56886 22077617 ~ 22085342 (-) True AMCG00016497
AMCG00016504 mRNA upstream 1820331 23841062 ~ 23862739 (-) True AMCG00016504
AMCG00016505 mRNA upstream 1843850 23864581 ~ 23885258 (-) False AMCG00016505
AMCG00016512 mRNA upstream 1872692 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016510 mRNA upstream 1896212 23916943 ~ 23925716 (-) True AMCG00016510
TU16905 other downstream 1881577 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 2911743 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 5155945 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 1434361 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 1678418 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 2290306 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 2290306 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 2860417 24881148 ~ 24882098 (-) True G14305

Expression Profile