RNA id: AMCG00016511


Basic Information

Item Value
RNA id AMCG00016511
length 886
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00016511
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23945194 ~ 23951329 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATATCTCTATTCACTTCCTTCTGGCTGCCAAACACACCATGACACCAAGCGCAGTCCTACAGGGACAGTTTGCAAGTTGTCTGTTGTTCTTCGTCTTCTCAGtcatgCGGACGGAGGAGGTCGTGACTTCAGAGAACATTACCACagtgatgggaggagcagccaTACTCCGCTGCCACCTGGCAGGAACAGAGGCGAAAATCACTCAGTTTGAATGGAGGAGGTGTGATGGGAAGCCGGTTTTTGTCTCCAATGTCATCCATGGAGTGCACATCATGGAGGAATACAAGGGGCGTGTCTCATTGGACGGCAACACCACCATCACTCTGCAGGGACTGACAGGCAATGACACCGGGGAATCCTCTGCTGGGGTCTGCAGACTGGTTGACCATATACATTGCTGTGGGAGCGCTGTGTCTGGCTATACTAAACAGAAGCGGCGGATAAGAAACCCAGTCCATGTAGCGGTGCACAGTGGAAGCCTCTCTGCAATCCAGCCATCCTTCATAGGGAAGAGACCGCAGCCCTCATCAGACCCAGGACACACAGGGCATGGGGAGTCTGAGGACGACCCGAGTGAAGATTACTTCAACATCCTGGTCACTCGGTCCTCCAAGGGTTCCCAATCCTTACCCACTTCCTCCCGGGCGCCATCAGGGACCTGAAGTCTCCCCCTTATCTGCCAGGTGCCTGAGTTTGGCACAGAACAGTAACTTGTTACTCATGTACAGCAAACCCCCGATTTCCCTTACACACCTttaaccattttgttttctttgatacAGGGACCCGAACAGAGTGTGTGTACATTAAATCAAAGTGCATTAAgtgtgtaatatttgtaattttaaatgaactgcttaaattaataaaactaataattgtA

Function

GO: NA

KEGG:

id description
K16350 TIGIT; T-cell immunoreceptor with Ig and ITIM domains

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17361 lncRNA downstream 1816 23942044 ~ 23943378 (-) True G14016
TU17360 lncRNA downstream 3656 23941318 ~ 23941538 (-) True G14015
TU17358 lncRNA downstream 10727 23934166 ~ 23934467 (-) True G14013
TU17356 lncRNA downstream 11351 23933009 ~ 23933843 (-) True G14012
TU17328 lncRNA downstream 62235 23880959 ~ 23882959 (-) True G13990
TU17453 lncRNA upstream 196070 24147399 ~ 24147677 (-) True G14092
TU17454 lncRNA upstream 213828 24165157 ~ 24165420 (-) True G14093
TU17560 lncRNA upstream 384615 24335944 ~ 24336827 (-) True G14171
TU17574 lncRNA upstream 473835 24425164 ~ 24425498 (-) True G14181
TU17593 lncRNA upstream 602363 24553692 ~ 24566678 (-) True AMCG00016538
AMCG00016513 mRNA downstream 7960 23934903 ~ 23937234 (-) True AMCG00016513
AMCG00016514 mRNA downstream 13614 23927891 ~ 23931580 (-) True AMCG00016514
AMCG00016510 mRNA downstream 19478 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016512 mRNA downstream 42389 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016505 mRNA downstream 59936 23864581 ~ 23885258 (-) False AMCG00016505
AMCG00016518 mRNA upstream 56559 24007888 ~ 24020791 (-) True AMCG00016518
AMCG00016517 mRNA upstream 78061 24029390 ~ 24039800 (-) True AMCG00016517
AMCG00016523 mRNA upstream 96491 24047820 ~ 24062602 (-) True AMCG00016523
AMCG00016524 mRNA upstream 111938 24063267 ~ 24068003 (-) True AMCG00016524
AMCG00016521 mRNA upstream 122113 24073442 ~ 24092600 (-) True AMCG00016521
TU17295 other downstream 244939 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 489383 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 3809647 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 4839813 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7084015 16858541 ~ 16861179 (-) False G12945
TU17551 other upstream 359708 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 359708 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 929819 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 1060012 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 1061035 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile