RNA id: AMCG00016513


Basic Information

Item Value
RNA id AMCG00016513
length 1001
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00016513
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23934903 ~ 23937234 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGCGCAGCTCTATAGGAGGAGAAACCAATGAGCCACGGCCCCGCGGTGGGACTGCTGATGCTCAATCTCTAGTCATCATGCCAATGTTGTGCGGAGGAACCGGCGAAACCAAGCCTGCCACGCCGGAGGTGCAAAAGATCTGCGACGAGGTCAAACTTCAGGTAGAAGAGAAGGCAGGGAAgacatttgaggttttcaatgcCAAGCAGTACAAGTCACAGGTAGTGGCTGGAACAAACTTCTTCATAAAGGTCCACACCGGAGGAGACGACTTTGTGCATGTCCGTGTTCACCAGGCCCTGCCTCACGAGAATCAAAAGCTGACGGTGCACAGCCTACAGTCCTCCAAGACTAAGGAGGATGACATTGTGTATTTCTGATCCTGTGGTGTAGCACCTTCCTGCCACTGTGGAGGAATTTGTAACCCTGGTGCCTAACATGTCCTCATACTCCCAAGCCTCATGAATTTTATATGACTGTAGGCTTTTGAGTagcccattattattattattttctaatttaggCTTTAGATTTTGGTAAATATGTACTCCTAATCCAGTAACCAGGCAAATCAATCTAGTTCTAGAGAAACCATTTGGAAAAACTGAGCTTCTGTTTTCTAACTGTCAGTGGAGGTTTAGCTGTGAAAGGTGTtgcacacattgttttaaatcgaTCTCGATGTGATCTAGCACCCTTTGCCAAAGTTTCTGCAAAGCGCTTCACAGCATTAATGTGTACAGGCAGTACATTATGAGAGTACCGATTGGtctggaaatgaaaaataagcagCATTAATCCATTGCAGTTGGAAAAcagaaattcatatttaaaactgaTTAACTTGTTCTGTGtaattgaacaataaaatattttcttctgacAGAAGCTGTTTTCAGTCCTTTTGTTACCCCAGTGCACCAATAATCCTGGCAGTGTCTTCAGGGTCTTCACAATGCCTTCTGCATCTGAAAGGGTGAATGAGCCTAACCTTTCG

Function

GO:

id name namespace
GO:0010466 negative regulation of peptidase activity biological_process
GO:0052548 regulation of endopeptidase activity biological_process
GO:0004866 endopeptidase inhibitor activity molecular_function

KEGG:

id description
K13907 CSTA_B; cystatin-A/B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17358 lncRNA downstream 436 23934166 ~ 23934467 (-) True G14013
TU17356 lncRNA downstream 1060 23933009 ~ 23933843 (-) True G14012
TU17328 lncRNA downstream 51944 23880959 ~ 23882959 (-) True G13990
TU17321 lncRNA downstream 59736 23874514 ~ 23875167 (-) True AMCG00016505
TU17307 lncRNA downstream 90682 23841062 ~ 23844221 (-) False AMCG00016504
TU17360 lncRNA upstream 4084 23941318 ~ 23941538 (-) True G14015
TU17361 lncRNA upstream 4810 23942044 ~ 23943378 (-) True G14016
TU17453 lncRNA upstream 210165 24147399 ~ 24147677 (-) True G14092
TU17454 lncRNA upstream 227923 24165157 ~ 24165420 (-) True G14093
TU17560 lncRNA upstream 398710 24335944 ~ 24336827 (-) True G14171
AMCG00016514 mRNA downstream 3323 23927891 ~ 23931580 (-) True AMCG00016514
AMCG00016510 mRNA downstream 9187 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016512 mRNA downstream 32098 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016505 mRNA downstream 49645 23864581 ~ 23885258 (-) False AMCG00016505
AMCG00016504 mRNA downstream 72164 23841062 ~ 23862739 (-) True AMCG00016504
AMCG00016511 mRNA upstream 7960 23945194 ~ 23951329 (-) True AMCG00016511
AMCG00016518 mRNA upstream 70654 24007888 ~ 24020791 (-) True AMCG00016518
AMCG00016517 mRNA upstream 92156 24029390 ~ 24039800 (-) True AMCG00016517
AMCG00016523 mRNA upstream 110586 24047820 ~ 24062602 (-) True AMCG00016523
AMCG00016524 mRNA upstream 126033 24063267 ~ 24068003 (-) True AMCG00016524
TU17295 other downstream 234648 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 479092 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 3799356 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 4829522 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7073724 16858541 ~ 16861179 (-) False G12945
TU17551 other upstream 373803 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 373803 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 943914 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 1074107 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 1075130 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile