RNA id: AMCG00016517


Basic Information

Item Value
RNA id AMCG00016517
length 5035
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00016517
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24029390 ~ 24039800 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGTGCTGTACTGACTAGTGGCATCACCACAGTCACATGTCTAAGGAAACTTGGACCAGGGTCAGGGAAATGGGAAAATACTAACTGTCTCTGTCACTGTTTGTGAGACTGTACATTTCATCTACTTCCATGAATACCGTCAGAcgaataaagaaaacaaacaaacataaaacagctccagctccaggatagagacagagagaaacgcCCTCAGACGCACACCTGTGGCCGCGGGAACTGAAGGGTTAGTGAGTGCTGACGTCACTGGGCGGCTGTGGAGGAAGTTGCCGCGCCGCTCGCCACTGTGCGGAACAGGCGGCTGCGTGAGGAGTGGGACGCGGGGCTTTAGGGCTCGTCTTAGGCGCGACTGCAGTGCGGGTCCTGCGTGTCTGGCGGCAGCTGCTCCGTGTCCGGACACCCGCACGGCGAGCTGTTCTAGGCTGTTCCATGTCGCCATAACTCCCCGCCGCCCGGAGTGGCTGGACCTCTGCGCCGAGCCGTGGGGGGGAGCTCCGTCTGCGCACAGAAAGGTGACTTCTGCACCAGGCGGCGTCCCGCACTTCTGCAGGGAAACAGGGATGCAATTAGATCTACAGTTCAGAGCAGGGCTGTAGGGTGGAGGCAGCATGAAGCGGAAGGGTGGCCAGCCGGCGGGGGAGGACGAGTCTCTGTGCTGCTGCGAGTATGTTGACCGCCAGGGGGAGAAGAGCCACCTGCTGGCTTGCTGCTGCGACTGTGCCGAGCTGGATCAGGCCTGCGACAGGTGGCTGAAGCGTGAGTCGCTTGACCCGGGCTCGGTGTCGCGGGTGGCAGAGACCGTGTCGGACCGACTGCGCGTGCCCTGGCTGTCGGGCGCCCGGCGGGTGGACCTGACGGTGTTGCCGCCACTCGTGCTGCTTCCTGTCCTGCTGCACGTGGCTGCACTGCACTTCCTGCTGGGGCTGGTGGTCCTAGCCACACTGCCGGCGCTGGTGCTGTGGTACTACTATGTCACGCACCGCAAGAAGGGCCGCACACTGTTCTTTCTCAGCCTGGGGCTCTTCTCCCTGGTCTACATGTACTACCTGTTCCTCACCGAGGTCGTGCCCAAGGGCGACGTGGGGCTGCTGCAGCTGGCAGCCATTACCGTCGGGCTGGTCCTGACTCTGGCCGCTCTGGCACAAACCAAGAAGGACCCCGGATACCTCAGGAGccagccccccccgccccctgctggagcacacagcacagtcacCTATCCTCCTGAGCGGGCGGGGCCAGGCGGGGTCCCCAACGGTGCGCGGCATGAGGTGTTGTTCCTGAATGGTGCGTCTCACTCGGAGCTGGGCAGAGCCAGCGGGGACCAGGAGAGGGTCAAAAAGAACTGGTGCCCCGCCTGCAGGGTGGTGCGCCCCCCCCGCGCTGGGCACTGCCGCATCTGTGCCGCCTGTGTGCAGCGCCTCGACCACCACTGCGTCTGGATCAACAGCTGCGTGGGCCAAGCCAATCACCGCTGCTTCCTGCTCACTCTGCTGCTGTTCCTGTTGACCGCGCTGTACGGGATCAGCCTGACGCTGGGCAGCGTGTGTCCCCGGCAGAGCGTCCTCATCGCCCTCCTCTACTGCCCTGGCGTGTACCAGCACTACAGCTCTGCGCTGTGCTTCACCTGTGCCTGGTACTGCAGCATCGTGACTGGGGGGCTGCTCCATCTGTTCGTGCTGCAGCTGATCAACGTGAGCTACAACGTGACGGAGCGAGAGGCGCGGTTGGCTCTGCGCGAGAAGACGGGGCGCCGGCGGCTGTGGGGCATGATCGTGGACACCGGCATCTACACACGCGGCTTCCGCAAGAACTGGGTCGACTTCCTGTCCATGGGCGGCCTGGGGCCCCTACCCCAGCGCCTCACTGACCTGGTGTAGCAGTGGCCCGAGGCAGCCAGTCACAGGCAATGCTGGTGGAGCCTTCCTTCCCCAGTGGTGCGCAGAGGTCTCCAACAGGGAGGTATGGGCCTGTCCGCACCCAACCGCCCAGGGGAGCTGCCACCAGCACCAGGCCTGCACACCTGCACCTGTCAGGGTTTTGTTCTGATTTTACGCATAGCTCTGCTTAGATTAGAGTAGACGCACAGGCTGGCAGTGGTGTGTCCACAGTGTGGTATTCGAGGCCTAAGGCAGGATGGACTAGCATATGAATCTATGACATGTCATCCCAGTCCAGTTCCTGAGTAAAGAAGGAAGTGCGACTTTTCCACACTGAATAAGCATTAATCATGAGTCCTGTTTGAGACATGCCTCCTCTTTTCAGAATCCATCTCCTGTCTTGTTCAGCTAGTGTCCCTGTACAACCTCACTGCACATCTGGCACACTGagcactgtcctctctgtcttGCTTGGAGACAACCCACAAGGTGAAATGGCTGATTCGTTACCCAGGCTGTGGAACAGTCAAGTGTCTCATAACCAGTGGGCTGTGGCACGAACAGGAGTTACATATGAGGgggagtggggggaaaaaaaaaaaagtttaaattaagtatgttttgcattttttcaatttaaataggAGTGCCCTGTTTGTAATACTTCAAAAGGTTACACCTACCTAACTTCAACatcaacattttcaattaatacaaGTAACGTCCTAAATTATCGGAATCAACGGTGATGTCGCActgcagagaagagagagagatgtttgaTGTAACCCATGGcccattttgacattttgacacattttaagGACTAACAGAAGCCTGAACCGAACTGGGCCCATACAGATCTACACCCCATCCAATTAAATATGTAGGAAATAAATCCCAACCTTAACAAAATCCTAAATTCGCTGGGGGCTCCCTGCTCTCTAAACAACGCACATGTAATCGTCAGGCCATTTCTACTTCCATCTGTATGCCTATTAaaactagattttttttattttagtttttatcgAGAATTGTTTCTTAAACATCCAGATCTTGAGTTTATATCTAAATTCCTTACACCTAAATCATATTTAGAAACTTATGCAGAAAACAGAGAATGGTCAATATAGTATGACATCAGTAGGTTACCTGCCCCTTTACAGTTGTCAAATTTTCATATTTCTGGTGTGCCACAGAATcatatgaacacatttaaaaataaataaaataatccctAACGAGAACAACATAACTGTATATTGGTACAAGCTCAGGATTATTGATGAAAGTTTTGAAGTTCAGTTTGGGGGGCTAATTAACTTGAAAATGTGTCATTCTAGGAATTGTCAATCTCTTACTCATGCTACTCAGTCTAGCTTGCCTCAGTTTAGATGAAGACTGCTATACTGCTTCCTCCCACTTGATGGTGGTATGTCACCACAGCTCTGTATGCAAAAGCTTAACGTGATCAGATTGTTTGTACTATGAAGCCTGAAGCTCCGACAGTACTGTTCTCTGCACAATCGTACCACTAGGCCAGCGGGTCCATGCCTTCTGGCCAGGCTGACTGAGGAGTCGGGGATCTAGATTCAACTCCAGAGGCCGACTGCTAGCCTCCTCCCAACGTTAGTAATGTTACCTTGAGTCAGACAGTATTTGTGGAAGTGGTGTATGTTCCTGCAAGCGGGGGAGGGTTGCCTTATGTAATGTGTGACCGCACGCTCTTCCTGACTAGAGTTGAGATAAAGGTGCAGTGTTCACCGCAGTTTGACACCCAAGCCGACTGTCATTATGCTGAGGTCCCCTGCATTTGACACCTTAAGAATCAAATGAGATGTATTTCAACCAAACAGAAtggaatggaaaaggaaaactgCTGAGGCTGTGAGTTCAGTGGCGGCAGGTCAGAGGTTTGCCTGGCCGAGAGCGCTGTGCTGTTCCACCTTTATAAACTTCACAGCTGGGTGCGTGAGGGTCAGGACAGTCTTCCATCACTCAATGTCATCGCTGACACCAACAGTATGAGCTAACTGTCCAGGGCTGGGGTTGAAGCCATGGGAGAGCAAATGACATGTGAGGTGCCCTGTTGGGTACTTACCAGAGATCCTGtgtgtggtgttttgttttccatcgTTGCTACTGAAGATCTGCTGGTGGTCAGATGTGTGCTCAGTGAGCCGCATTTATCTGCTTCAGTGCGTGTCTTTCACACAATCATTTAATGTGCACAAAAATAGAGCATTGTTAATAGATTTTGCTTTTGtagtatataaattattttatatcaatGTATATTAGTgtaaatgctatatatatatatatgtatatatatatatatatatatgtatatgtatgtatatcttgtataaaatgcacacaaaaaacatacatttgtttaatcaagtgcaataaatgaaaactttatATACAGGTGTTCCTGAGAAATTACTCAATATGATCAGGAGTTGATTGGCAGCTGATTAAATAAACACTAGAACTTGAAAAGGATGCAGTGGATGTACAGAGACCTTTTTTTATTGgtacataattatattaaataaggGCTTTATACATGAGCAATTAATTCCCTCCCCCAttgttttccttaaataaaactGAGCTTTGTTTCCTCCCCCTGAGCATGAGCATGTGCGGGAGTTGTGGGGCCCATGTGTGTCACTGCAGCCACATCCTGTGTGAGTGTGATGAAGGCAGCAGGATGAAGCACAGGCACGTGTCCGGGGGCAGGTGGGCACAAGGAGCTTGGGCACAGAGGACCCCAACACAGTCCTAGCCTTCAGGGCTGGTATCCTAGAAATGCCCTTCGCCAATAAACAGATGCCCCCGAGCAGTGACACTCTTCCGCTACAGCAAAGACACGGGCTGGCACCTGCCTACCGTTGATGCCCACTGTTACAGTGGACGAAGTAGCCTTTGACCCCTCCCTTAATCAGGACAGGTAGGTGAACTTAAACTGTTGTAGCGATGTGTGGGGAAGAATTAagtcatgtttgttttgaatttgacatCAGGATCCTTACAGTCTAAACGTACAGCCCAGAAATATTAAAgctaattcatatttaaatatatatagttatttaaacaaatcaaagtgGTGGAAACCCC

Function

GO: NA

KEGG:

id description
K18932 ZDHHC; palmitoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17361 lncRNA downstream 86012 23942044 ~ 23943378 (-) True G14016
TU17360 lncRNA downstream 87852 23941318 ~ 23941538 (-) True G14015
TU17358 lncRNA downstream 94923 23934166 ~ 23934467 (-) True G14013
TU17356 lncRNA downstream 95547 23933009 ~ 23933843 (-) True G14012
TU17328 lncRNA downstream 146431 23880959 ~ 23882959 (-) True G13990
TU17453 lncRNA upstream 107599 24147399 ~ 24147677 (-) True G14092
TU17454 lncRNA upstream 125357 24165157 ~ 24165420 (-) True G14093
TU17560 lncRNA upstream 296144 24335944 ~ 24336827 (-) True G14171
TU17574 lncRNA upstream 385364 24425164 ~ 24425498 (-) True G14181
TU17593 lncRNA upstream 513892 24553692 ~ 24566678 (-) True AMCG00016538
AMCG00016518 mRNA downstream 8599 24007888 ~ 24020791 (-) True AMCG00016518
AMCG00016511 mRNA downstream 78061 23945194 ~ 23951329 (-) True AMCG00016511
AMCG00016513 mRNA downstream 92156 23934903 ~ 23937234 (-) True AMCG00016513
AMCG00016514 mRNA downstream 97810 23927891 ~ 23931580 (-) True AMCG00016514
AMCG00016510 mRNA downstream 103674 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016523 mRNA upstream 8020 24047820 ~ 24062602 (-) True AMCG00016523
AMCG00016524 mRNA upstream 23467 24063267 ~ 24068003 (-) True AMCG00016524
AMCG00016521 mRNA upstream 33642 24073442 ~ 24092600 (-) True AMCG00016521
AMCG00016522 mRNA upstream 83636 24123436 ~ 24141614 (-) True AMCG00016522
AMCG00016525 mRNA upstream 158085 24197885 ~ 24213659 (-) True AMCG00016525
TU17295 other downstream 329135 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 573579 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 3893843 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 4924009 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7168211 16858541 ~ 16861179 (-) False G12945
TU17551 other upstream 271237 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 271237 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 841348 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 971541 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 972564 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046312 True 1697 mRNA 0.49 5 NC_007135.7 21122836 ~ 21131607 (-)