RNA id: AMCG00016526


Basic Information

Item Value
RNA id AMCG00016526
length 3851
RNA type mRNA
GC content 0.60
exon number 30
gene id AMCG00016526
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24215947 ~ 24243375 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGACTTCAGTCACCTTAGCGGTCGCGCTGCGTCGTGGTGAGCCCGGCCGCAGCCCCGCACAGGAGCGCAGCTGTGGTCCCTGGTCTCGGCTCGCTTTGTGCGTGTGAGCGCTTATGCAGCCTCTGCTTCTTTGCGCAATCGCGGCGCCTTTCAGTCCGCAGACTAGATAGAACTGGATCAGACGGATGAGCGCAGCCGGCCACCTGAGCCGAAAGTAATTGCGCCGCGCAATGACGGCTCCTGAAATACGCAGCGGCGCCGCGGGCAGGGGACACTGCTGAAGGGACGGGTCCACGGACAGAGACGGGCACGAAACACAGCTAAACTCACACACAGGGACGGGAACCGGGGGCAAGGAGAAGAGCCACTCGCTGTTTGGAAAGCGTCATGGAGGTCTCTCCCTCTCAGCCCACTGCGGAGACCGGGGGCGATCATGCGGCCAGTGTGGTGGCCGGCGCCGGGGCGGACAGAGCGGACATCCCCAGCCCCAGCCTCCCGTCCAAGCAGCGCTCTCTGCGGGCGGTTTATGTGCTAAATGACGGGCTGAAGGCGGTGGCCGCGAACAGCCCCGAGTCGGGGGCTCTGCAGTGCCTGCAGCGGGCGTGCGACGCCGAGAGCGCCATCCTGACCACCCTGACCTTCGGCCGGCTGGACTTCGGGGAGACCACGGTCCTCGACACCTTCTACGATGCGGCGCAGTCGCTCAAGGATATGGTGACTCAAAAAAACACAGCCTCCAGTGGTAACTACTACTTCATCCCATATGTGATGACACCCAACAACGAGTACATGTGTTGTGAGAACGACGCACAGCGCCGGGCGTCCGAGTACATGCAGCCCAGCTGGGACAGCCTGCTGGGGCCTCTGTGTGTGCCGCTGGTGGAGCGCTTCATCAGCCTGCTGAAGGACATCCATGTCACATCATGTGCATCTTACAAGGACACTCTGCTGAATGACATCCGCAAAGCGAGGGACAAGTACCAGGGTGAGGAGCTGGCGAAGGAGCTGTCCCGCATCAAGCTGCGCATCGACAATACAGAGGTCCTCACCCAGGACATCGTCATGAATCTGCTCTTCTCCTACAGGGACATCCAGGACTATGATGCCATGGTGAAGCTGGTGCAGACCCTGGAGATGCTACCCACCTGTGACCTGGCAAACCAGCCAATGATCCAGTTCCACTTCGCCTTTGCTCTCAACAGgagGAACAGTCCAGGAGACAGGGAACAGGCTCTGGGCGTGATGCTGCAGGTGGTTCAGTCCTGTGATCACCCCGCCCCCGACATGTTCTGTCTCTGTGGACGCATCTACAAGGACATCTTCCTGGACAGCGACTGCAAGGACACCAAGAACAGGGACAATGCCATTCAGTGCTCCATCGAGCTGCGGAAGATAGGTGTGCGTCTGAACAGCCTTCTGGGTCGGAAGGGCAGTCTGGAGAAAATGAACAACTACTGGGATGTGGGCCAATTCTTCACCAAGCAGAACCTGGAGCACTCGCCCCAGCGGGAGCGGCTCAACTTCTGGATGGACATCATCGTGGAGGCCACTCGAGAGACGACCAACGGCCTGCGATTCCCGGTACTGATACTGGAGCCCACAAAGATCTATCAGCCATCCTACGTCTGCATCAACAGTGAAGCGGAGGAGAAGAATGTCTCCATCTGGCACGTCTCCCCGTCAGAAACGAAAGGGATCCACGAGTGGAATTTCACAGCCACCTCTATCAAGGGAATAAGTATATCCAAGTTCGACGAGCGCTGCTGCTTCCTGTACGTCCACGACAACTCGGATGACTTCCAGATCTACTTCTCCACCGAGGACCAGTGTGGCAGGTTCTGCTCCATGGTGAAGGAGGTCATCTCAGACGGCTCGGGGAACGCAGTGGAGCTGGAAGGGGAAGCTGACGGAGACACACTGGAGGTGCGCATTGCCATCAAGGAGATacctgagagagacagcagGTACTCCCAACCCCTGCATGAGGAGATCGCCCTGCACAAGTACCTGAAGCACAGGAACATCGTGCAGTACCTGGGCTCTATCCTGGAGGGGCTGCGCTACCTGCACGAGAACCAGATCGTCCACAGGGACATCAAGGGGGACAATGTGCTGGTGAACACATACAGTGGGGTGCTGAAGATATCCGACTTTGGGACGTCCAAGCGGCTGGCGGGGGTCAACCCCTGCACTGAGACCTTCACCGGCACGCTGCAGTATATGGCCCCAGAGATCATAGACAAGGGCCCGCGGGGGTATGGCGCCCCGGCGGATATCTGGTCCCTGGGCTGCACCATCATTGAGATGGCCACGGGCAAGCCACCCTTTCACGAGCTGGGGGAGCCGCAGGCAGCCATGTTCAAGGTGGGGATGTTTAAGATCCACCCGGAGATCCCAGAGTCCCTCTCTGTCGAGGCCAAGTCCTTCATCCTGCGCTGCTTCGAGCCCGACCCCAACAAACGGGCCACAGCCACTGATCTGCTGAAGGACTCTTTCGTCCGGCACAACGTCAAGGGCAAGAAGAACAAGATCGCCTTCAAACCCTCCGACTACATCCGCAGCGTGTCGCTCCCGGTGCAGATGCAGGGCGAGAGTgcgggcagcagcagcagcgagcATGGCTCTGTGTCGCCTGACTGCGACGTCAAGCACGACGTGTTCTTCGACAAGAAGAAGCGCTCCAACTCGGAGAACCTCATCAAGTCGCCCAGCTCCAACTTCCTCAGTGTCCCAGACGACGGCTCTGTGTCGGAGGACCGCAgcgcccccccctccccagagGACCGTGACGCCGGGCTGTTTCTGCTGAAGAAGGACAGTGAGCGCAGGGCCATCCTGTACAAGGTCCTGAACGAGGACCAGGACAAGGGCAGTGAGGAGTTGAAGCTGTCGGTTGACCACATCAAGCAGATCATCTGCATCCTGCGGGACTTCATCCGCTCGCCCGAGCGCCGCGTCATGGCAACCACCATCTCCAAACTCAAACTAGACCTGGACTTCGACAGCACCTCCATCAACCAGATACAGCTGGTGCTGTTCGGTTTCCAGGACTCGGTGAACAAGGTCCTGAGGAATCACCACATCAAGCCCCACTGGATGTTTGCCATGGACAACATCATCCGCAGGGCTGTACAGGCTGCAGTCACCATCCTCATCCCAGAGCTGCAGACTCACTTCGGCCCGGCGTCGGAGAGCGAGGGCGTGGACAAGGACGCAGACGATGTGGACGTGGAAGACGGGGAGTTCCCAGGCAACGACCCCGTGGCCCCTGAGGACCCCGGCCTCACCTCGGGCGTCAGCACCCTCAGCTCTGTGATGTCACATGACTCCCAGCGCCCGCACCACCCTCTGGGTGCCCAACTGGGCCGGCTCAAGCAGGAGACCAGCAGGTTGCTGGAGGACCTGGTCCAGAAGGAGAAGGAGTACCAGCTGGTCCTCAGACAGACACTGCAGCAGAGAGCCCATGAGCTGGAGCTCATCCGGGTCAAGTCCAGACCCACCGACATCCCAACTCCCTCCATATTCCACATCCCTGCGGATCTGGAAGCAGACAAGGAGCTGTCGGCCTGGCTGAAGGAGCATGGAGCTGACGCTGACACCATAGAGAGGTTTGTTGTGGAGGACTACACGCTCAATGATGTTCTCAATGATGTCACCAAAGACGACCTGCGATACCTGAGACTGCGGGGAGGCGTGCTGTGCCGGATATGGCGGGCCATCCAGAAGCACCGCAGCAAGGCGCTGAGGCTGCAGCAGAAGACTAGGAGCCCAGAGTATGATGAAACACGAAAGGAACACACGGAACATCCTGGACCAGAGCTGAGGACCCCTCTGGCATCGGAGGACTGA

Function

GO: NA

KEGG:

id description
K13986 MAP3K15; mitogen-activated protein kinase kinase kinase 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17454 lncRNA downstream 50527 24165157 ~ 24165420 (-) True G14093
TU17453 lncRNA downstream 68270 24147399 ~ 24147677 (-) True G14092
TU17361 lncRNA downstream 272569 23942044 ~ 23943378 (-) True G14016
TU17360 lncRNA downstream 274409 23941318 ~ 23941538 (-) True G14015
TU17358 lncRNA downstream 281480 23934166 ~ 23934467 (-) True G14013
TU17560 lncRNA upstream 92569 24335944 ~ 24336827 (-) True G14171
TU17574 lncRNA upstream 181789 24425164 ~ 24425498 (-) True G14181
TU17593 lncRNA upstream 310317 24553692 ~ 24566678 (-) True AMCG00016538
TU17594 lncRNA upstream 310317 24553692 ~ 24566678 (-) False AMCG00016538
TU17614 lncRNA upstream 358323 24601698 ~ 24602007 (-) True G14213
AMCG00016525 mRNA downstream 2288 24197885 ~ 24213659 (-) True AMCG00016525
AMCG00016522 mRNA downstream 74333 24123436 ~ 24141614 (-) True AMCG00016522
AMCG00016521 mRNA downstream 123347 24073442 ~ 24092600 (-) True AMCG00016521
AMCG00016524 mRNA downstream 147944 24063267 ~ 24068003 (-) True AMCG00016524
AMCG00016523 mRNA downstream 153345 24047820 ~ 24062602 (-) True AMCG00016523
AMCG00016528 mRNA upstream 3807 24247182 ~ 24249577 (-) True AMCG00016528
AMCG00016527 mRNA upstream 6742 24250117 ~ 24270251 (-) True AMCG00016527
AMCG00016533 mRNA upstream 47319 24290694 ~ 24304314 (-) True AMCG00016533
AMCG00016531 mRNA upstream 65881 24309256 ~ 24323458 (-) True AMCG00016531
AMCG00016530 mRNA upstream 95069 24338444 ~ 24354199 (-) True AMCG00016530
TU17295 other downstream 515692 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 760136 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 4080400 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 5110566 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7354768 16858541 ~ 16861179 (-) False G12945
TU17551 other upstream 67662 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 67662 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 637773 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 767966 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 768989 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_07011537_07045271.mRNA True 4609 mRNA 0.50 27 CI01000018 7010961 ~ 7045271 (+)