RNA id: AMCG00016535


Basic Information

Item Value
RNA id AMCG00016535
length 626
RNA type mRNA
GC content 0.53
exon number 7
gene id AMCG00016535
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24372069 ~ 24375807 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCGCAGTGTGCACGGCGAGGAGGAGACATTTCCTGCGTCGGCGCTGAGGAAGAGGCAGAGAGGCTGAGTGAGAGAGCTGCTCGCCCGCCACTGACACCCAGATTAACAACACTACACCCCGCGTAGCCGTCCGGACAGCTCGGGAGGAAGATAGCCCTGTCTGCTAGCCAACATGCCCAAGAATAAAGGTAAGGGAGGTAAGAATCGACGACGTGGTAAGAATGAGAACGAGTCTGAGAAGAGAGAACTGGTGTTCAAGGAGGACGGCCAGGAATACGCCCAGGTCATCAAGATGCTTGGGAACGGGCGTTTGGAAGCCATGTGTTTTGACGGAGTGAAGAGGCTCTGTCACATCCGGGGCAAGCTGAGGAAAAAGGTTTGGATAAACACCTCGGACATCATACTGGTGGGATTGAGGGACTATCAGGATAACAAGGCTGATGTCATTCTCAAGTACAACGCTGATGAAGCCAGGAGCTTAAAAGCCTACGGAGAGCTGCCAGAGCACGCTAAAATCAATGAGACGGACACATTCGGCCCTGGAGATGACGACGAGATTCAGTTCGATGACATCGGAGATGACGATGAAGACATTGATGATGAGACCCGTCAGTGGGAGCGGTGA

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0005829 cytosol cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03236 EIF1A; translation initiation factor 1A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17560 lncRNA downstream 35242 24335944 ~ 24336827 (-) True G14171
TU17454 lncRNA downstream 206649 24165157 ~ 24165420 (-) True G14093
TU17453 lncRNA downstream 224392 24147399 ~ 24147677 (-) True G14092
TU17361 lncRNA downstream 428691 23942044 ~ 23943378 (-) True G14016
TU17360 lncRNA downstream 430531 23941318 ~ 23941538 (-) True G14015
TU17574 lncRNA upstream 49357 24425164 ~ 24425498 (-) True G14181
TU17593 lncRNA upstream 177885 24553692 ~ 24566678 (-) True AMCG00016538
TU17594 lncRNA upstream 177885 24553692 ~ 24566678 (-) False AMCG00016538
TU17614 lncRNA upstream 225891 24601698 ~ 24602007 (-) True G14213
TU17615 lncRNA upstream 230301 24606108 ~ 24606321 (-) True G14214
AMCG00016532 mRNA downstream 9031 24355911 ~ 24363038 (-) True AMCG00016532
AMCG00016530 mRNA downstream 17870 24338444 ~ 24354199 (-) True AMCG00016530
AMCG00016531 mRNA downstream 48611 24309256 ~ 24323458 (-) True AMCG00016531
AMCG00016533 mRNA downstream 67755 24290694 ~ 24304314 (-) True AMCG00016533
AMCG00016527 mRNA downstream 101818 24250117 ~ 24270251 (-) True AMCG00016527
AMCG00016534 mRNA upstream 60 24375867 ~ 24392855 (-) True AMCG00016534
AMCG00016539 mRNA upstream 172570 24548377 ~ 24550125 (-) True AMCG00016539
AMCG00016538 mRNA upstream 178400 24554207 ~ 24566956 (-) False AMCG00016538
AMCG00016546 mRNA upstream 345382 24721189 ~ 24739122 (-) True AMCG00016546
AMCG00016545 mRNA upstream 386762 24762569 ~ 24786410 (-) True AMCG00016545
TU17551 other downstream 55267 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other downstream 55267 24311037 ~ 24316802 (-) False AMCG00016531
TU17295 other downstream 671814 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 916258 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 4236522 20135197 ~ 20135547 (-) False AMCG00016453
TU17725 other upstream 505341 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 635534 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 636557 25012364 ~ 25015343 (-) False AMCG00016562
TU17849 other upstream 704761 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 897857 25273664 ~ 25277478 (-) False AMCG00016579

Expression Profile