RNA id: AMCG00016562


Basic Information

Item Value
RNA id AMCG00016562
length 2160
RNA type mRNA
GC content 0.72
exon number 3
gene id AMCG00016562
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25007974 ~ 25015343 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGCAGGAGTGGTTTCCGTGGCGATGGACCCTCCCAGCCCAGCGGCAGACCGCGCGGCCGGCGGGCTGGATGAGCGGCGGCGGCAGCAAGAGCGGCTGCACCGTGAGGAGGCATACTACCAGTTCATCAATGGGCTGAGCGAGGACGAGTACCGGCTCATGAGGGACAGCAACCTGCTGGGCACGCCAGGTGAGGTGACCGCGGAGGAGCTGAGGCAGCGACTGGATGGGGCAAAGGAGCGCCTGTCCTCTCAGCCCAGCGTGGATGCCGGCCCACCTGCAGAGGAGGACAGCAGCAATGGAGCCGGTGAGCCAGCTGGGGAGGCCTCGAATGGTGACTCTCTCCTGGAGTGGCTGAACACGTTCCGGCGCACGGGTAATGCCACGCGCAGCGGGCAGAGTGGCAATCAGACGTGGCGTGCGGTGAGCCGCACCAACCCGAACAGCGGTGAGTTCCGCTTCAGCCTGGAGATCAACATCAACCACGAGCAGCCCGAGCCGGCTGAGCTTGACCCGGGTGACGCCCCTCCGGCCTCACTCACcgccccccaccctccaccaCGGGTCACCCAGGGCCGCCGAGCGCAGGCAGCCGCGGCCAGGAGAACACGCGGTAGCCTGGCCCCGCCCTCCCCAGACCCCCCTGCTGGCAGGACGCGCAGCCTGCGGAGGAGCGAGGTCCCgctgccccccaccccagccccaCCCCGCCGCGCACGGACCAGTGGGGGCCGGCGTGGTCGTGCCCGCCTCTCCCCTCGCCCACAGACTCTCGGCGCACAGGAGCCGCCCACAGACTCTCCGGCCACGCCGCCCTGCCCCCGAGTGCTGCCTGAGCTCCAGCTGCAGGGGGAACCAGCGCCGGCCACCGCCCCGCTCCGCAGCAGCAGGACTAGAGCCCGGGGCCGGGGCGGGCGGGGCGGGCGGGGCGGGGCGTCCCACAGCCAGGCCGGGGGGAGAAGCCGCTCTCCGCTGCGCAGGGAGCCGGGCGAGACGGCCCCTCCATCACccagggagggggagggggagggggcaggagaAACTGTGACTGCGGGTGGGGTAGGGACTCTGGGGGTCGCCATGGAGACCGAGCAGCCAGCCAGGGAGCCGGGCGCCGCCCCCGTCACGGCGCCTCCTCCGCCCGCCCCAGAGGGCgcagtggaggagggggaggcgCAGGTGGCGGGGGCGGCCGGGGCTGGGGGCGGCAGCATGCGTCGCCATCCCACCATCATGCTGGACCTGCAGGTGCGGCGCATCCGGCCGGGGGAGAACCGCGACCGCGATAGCATCGCCAGCCGCACGCGCTCACGGGTGCGCATGGCCGAGAACACGGTGACCTTCGAGAGCGACAGCGGGGGCTTCCGCCGCACCATCTCCCGCTCGGAGCGCGCCGGCATCCGCACCTACGTCAGCACCATCCGCATCCCGCTGCGCCGCATCTCCGAGACCGGGCTGGGAGAGCCGTCCTCCACCGCGCTGCGCTCCATCCTGCGCCAGATCATGACGGGCTTCGGGGAGCTCAGCTCGCTCATGGAGACCGAGGCCGACTCTGAGGCGGCCGCTCCCGGGCTGGAGGGCGGCGGTGGTCCGGCCGTGCAGACCTTCCGCGTCCACGCCAACGACGGCCCGGTGCCCCGAGACGCCGTAGAGCGCCGTGGGGTGGacggggaggtgggggtgggggtgggggtgggattGGCATCGGCAGCagaggaggacgaggacgacgaggaagaggaagagggcGAGGAGCGGCGGCTGGGAGGAGGGGGCAATGCCCAGCTGGCGGGGCAGCAGCAGGGCGAGGGCAGACAGGCCCACAGGGACACCAACAACCTGGTGGAGAACGGCACGCTGCCCATCCTGCGGCTGGCGCACTTCTTCCTGCTGAAtgacgaggaagaggaggagcacCCGCGCGGGCTGAGCAAGGAGCAGATCGACAACCTGTCCACGCGCACCTACGGCCTGGCCAGCCTGGAGGGGGAGCTGGGCCGCACCTGCAGCGTCTGCATCAACGAGTACGCCCAGGGCAACAAGCTGCGCCGCCTGCCCTGCGCCCACGAGTTCCACATCCACTGCATCGACCGCTGGCTGTCCGAGAACAACACCTGCCCCATCTGCCGCCAGCCCATCCTGCAGCCTCCCCACGACTGA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17765 lncRNA downstream 45 25008156 ~ 25010763 (-) False AMCG00016562
TU17733 lncRNA downstream 104262 24905121 ~ 24906546 (-) True G14311
TU17653 lncRNA downstream 230542 24716726 ~ 24780266 (-) True G14245
TU17623 lncRNA downstream 326273 24683065 ~ 24684535 (-) True G14222
TU17619 lncRNA downstream 392463 24615787 ~ 24618345 (-) True G14218
TU17860 lncRNA upstream 108612 25122090 ~ 25122375 (-) True G14400
TU17952 lncRNA upstream 391417 25404895 ~ 25405101 (-) True G14472
TU17955 lncRNA upstream 399838 25413316 ~ 25414098 (-) False AMCG00016591
TU17979 lncRNA upstream 503511 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 503511 25516989 ~ 25520096 (-) False G14487
AMCG00016564 mRNA downstream 9353 24973047 ~ 25001455 (-) True AMCG00016564
AMCG00016556 mRNA downstream 57175 24930817 ~ 24953633 (-) True AMCG00016556
AMCG00016555 mRNA downstream 116389 24883903 ~ 24894419 (-) True AMCG00016555
AMCG00016552 mRNA downstream 132581 24875864 ~ 24878227 (-) True AMCG00016552
AMCG00016551 mRNA downstream 200896 24802736 ~ 24809912 (-) True AMCG00016551
AMCG00016565 mRNA upstream 43082 25056560 ~ 25057570 (-) True AMCG00016565
AMCG00016563 mRNA upstream 59692 25073170 ~ 25080493 (-) True AMCG00016563
AMCG00016570 mRNA upstream 92854 25106332 ~ 25107565 (-) True AMCG00016570
AMCG00016569 mRNA upstream 111305 25124783 ~ 25133808 (-) True AMCG00016569
AMCG00016573 mRNA upstream 201589 25215067 ~ 25218658 (-) True AMCG00016573
TU17725 other downstream 128710 24881148 ~ 24882098 (-) True G14305
TU17551 other downstream 694006 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other downstream 694006 24311037 ~ 24316802 (-) False AMCG00016531
TU17295 other downstream 1310553 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 1554997 23455092 ~ 23455811 (-) True G13962
TU17849 other upstream 67090 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 260186 25273664 ~ 25277478 (-) False AMCG00016579
TU18038 other upstream 739517 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 1068025 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 1143043 26156521 ~ 26159442 (-) True AMCG00016616

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046332 True 2097 mRNA 0.59 3 NC_007135.7 21504215 ~ 21507627 (-)
grasscarp (Ctenopharyngodon idella) CI01000018_04557779_04561445.mRNA True 2708 mRNA 0.54 4 CI01000018 4557636 ~ 4561997 (-)