RNA id: AMCG00016564


Basic Information

Item Value
RNA id AMCG00016564
length 2930
RNA type mRNA
GC content 0.57
exon number 24
gene id AMCG00016564
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24973047 ~ 25001455 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCAATTAGTAATGAGTGAAATTAGCAAGGACACAACTTGCCTCTCTCCCCAAAGCGATGACGAGGGTGTGGAGGCCCGGATTTGCTCAAGGCTGTCAGATAAGCGCATTCCCCGGACGTTCGAGAAAAGACCCGCTTGTTCGTCCTCGGGCTACCAGAAGGCGGATGATGAGATGTCTGGCACCACCTCTCAGGCGGACCTGCTCGATGCCACCGCCAGGACCATCCTGCTGAACCAGGCGCAGGTCACCAAGTTCTGCGACAACCATGTCAGCACGGCGAAGTATGGTTTCCTGACCTTCCTCCCGCGCTTCCTGTACGAGCAGATCAGGAGAGCGGCCAACGCCTTCTTCCTGTTCATCGCCTTACTGCAGcAAATCCCGGACGTGTCTCCCACTGGCCGCTATACCACCCTGGTGCCCCTCATCTTCATCCTGACTGTGGCGGGAATCAAGGAGATCATTGAGGACTATGTGAGCGTGCCTGGTTACGGGCCCTGTGCTGGCCCTTGTTACGCAATGGCACCTGGCAGACCGTCATATGGAAGCAGTGAGCCCCAAGCGATGTGCTACACAGAGACCTCCAACCTGGACGGGGAGACCAACCTGAAGATACGCCAGGGTCTGCCCCTGACTGCTGGTGCCCAGTCTCAGGAGGACCTGATGTCCATCGCCGGGCGGCTGGAGTGCGAGGGGCCCAACCGGCACCTGTACGACTTCACCGGCACCCTGCGACTCGACAACCACAATCCGGTCCCGCTGGGTCCAGACCAGGTTCTGCTGCGGGGGGCACAGCTGCGGAACACCCAGTGGGTTGTGGGAATTGTAGTTTACACTGGACACGATTCCAAACTCATGCAGAACTCCACCAAGGCCCCCCTGAAGCGCTCGAACGTGGAGCGGGTCACCAACATGCAGATCCTGGTGCTGTTCTGCATCCTCCTGGTGATGGCACTGGTGAGCTCGGTGGGCGCGGCCATCTGGAACAAACAGCACACTGAGCAGACCTGCTGGTACCTGTCCAGGACAGCTGACATCTCCACCAACTTCTGGTACAACCTGCTGACCTTCATCATCCTCTACAACAACCTGATCCCCATCAGCCTGCTGGTCACTCTGGAGGTGGTGAAGTTCACACAGGCTCTCTTCATCAACTGGGACACGGAGATGTACTACGCTGAGACTGATACCCCCGCCATGGCGAGGACATCCAACCTCAACGAGGAACTGGGCCAGGTGAAGTACCTCTTCTCAGACAAGACAGGGACCCTAACCTGCAACGTCATGCACTTTAAGAAATGCACCATCGCCGGGATCACATACGGgCACTTCCCTGACTTGGACTGCGACCCCTCCATGGAAGACTTCAGccacCTCCCATCAAGCAGCCACAACTCCACGGAGTTCGACGACCCGGCGCTCATACAGAACATCGAAAAGAATCACACCACAGCTCCTCAGATCTGTGAGTTCCTCACCATGATGGCTGTGTGTCACACTGTGGTTCCTGAGAGGGATGGGGAGCAGATCATCTACCAGGCGTCTTCTCCAGCCCAACCCAACCCAACACAGCCCAGCTCAACACAGCCCAACACAGCCCAGCCCAACACAGCCCAACACAACCCAACACAGCCCAAcccaacacagtgcatcacagcagttctctccctcactctcacactgacGGGCAGTTTGAACAGTACTCTGTGGTGTGTGGCGAAGGTGGAGAGAGAGGCCCTGACCTTCCTCCTGTGTTTTGCAGATGAGGGCGCGCTGGTGAAAGGAGCAAAAGGCCTGGGCTTTGCGTTTACTGCCAGGACGCCGAGCTCTGTCATCATTGACGCGAGGGGGAAGGAGCAGAGCTTCGAGCTGCTGAATGTGCTGGAGTTCTCCAGTAACCGCAAGAGGATGTCCGTGATCGTGAGAACGCCATCGGGGAGACTGCGTCTGTACTGCAAGGGCGCGTTTGCCACTGAAGGTATGCCAGGCCTGACCCCGTCCCCTCAGCCTCTCTCTTGCTGCCTCTCTGCTTCACTTCTCCCCTGCGTAATCTGCATCTATCCCCCACcacgctctctccctccctccctcagtctCACAGTTTGCCCCCTGCCCTCCCCAGGTCTGCGCACACTGTGCTTTGCCTATGTGGATCTGTCGGAGAGTGCGTATCAGGAGTGGCTGAGGGACTATACACGCATCAGCACTAACCTCCTCCTGCTGGGAGCCACGGCCATCGAGGACCGACTCCAGGCTGGGGTCCCCGAGACCATATCCACTCTGATAAGGGCCAACATCAAGATCTGGGTCCTGACTGGAGACAAGCAAGAGACGGCCATCAACATCGGTGAGGAGGGGGAGGTGCAGGGTGTTGTGGCGGGGTTCCTCAGCTCCCTGTGTCTTGGAGTGACTTATTTTGCACAGGGCTGCTGTTTGCTGGTGGTGGGGAGGTTGATCGCTGACAGCACAGCAGTGTCAGATGATTCAGGTTCTTGGAttcaggaggaaaaaaaagatattcaAAAATGTGCCACAGCTGGCTGTGTGGcacactctctcctctctcagtaCTGCGGGCGCGGAGACCTGTCTGTACAGGACACCCTGCCTCCGCGTCCCCATCACTTGGATTCAGGAGACATTTTAAACCTGCAATTATCCAGCCTACAACAATCTCAttccttcatttttaaatataaagaaaaagcctTGGGAAGCAAGGGATCGTCCTGCAGTTCCTGGAAAGGCAACAATGGCCTCATTGAAGGAACAGGGGATAAcaagatgaaaataaacagatttatgTATAAACAGGGGCAAACCCAAGGCCCACCCAGTATGGAGTTTCTCTCTGAGGGGTGCGGGGGTGGGATAGCCCCCTCTGCTGAGTGCGTCTGTGTGGAGATCTGGAGGCAGGGGGCTGCAGGggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17733 lncRNA downstream 66501 24905121 ~ 24906546 (-) True G14311
TU17653 lncRNA downstream 192781 24716726 ~ 24780266 (-) True G14245
TU17623 lncRNA downstream 288512 24683065 ~ 24684535 (-) True G14222
TU17619 lncRNA downstream 354702 24615787 ~ 24618345 (-) True G14218
TU17615 lncRNA downstream 366726 24606108 ~ 24606321 (-) True G14214
TU17761 lncRNA upstream 6519 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA upstream 6701 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA upstream 6701 25008156 ~ 25010763 (-) False AMCG00016562
TU17860 lncRNA upstream 120635 25122090 ~ 25122375 (-) True G14400
TU17952 lncRNA upstream 403440 25404895 ~ 25405101 (-) True G14472
AMCG00016556 mRNA downstream 19414 24930817 ~ 24953633 (-) True AMCG00016556
AMCG00016555 mRNA downstream 78628 24883903 ~ 24894419 (-) True AMCG00016555
AMCG00016552 mRNA downstream 94820 24875864 ~ 24878227 (-) True AMCG00016552
AMCG00016551 mRNA downstream 163135 24802736 ~ 24809912 (-) True AMCG00016551
AMCG00016550 mRNA downstream 172853 24790148 ~ 24800194 (-) True AMCG00016550
AMCG00016562 mRNA upstream 9353 25010808 ~ 25013478 (-) False AMCG00016562
AMCG00016565 mRNA upstream 55105 25056560 ~ 25057570 (-) True AMCG00016565
AMCG00016563 mRNA upstream 71715 25073170 ~ 25080493 (-) True AMCG00016563
AMCG00016570 mRNA upstream 104877 25106332 ~ 25107565 (-) True AMCG00016570
AMCG00016569 mRNA upstream 123328 25124783 ~ 25133808 (-) True AMCG00016569
TU17725 other downstream 90949 24881148 ~ 24882098 (-) True G14305
TU17551 other downstream 656245 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other downstream 656245 24311037 ~ 24316802 (-) False AMCG00016531
TU17295 other downstream 1272792 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 1517236 23455092 ~ 23455811 (-) True G13962
TU17766 other upstream 9886 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 10909 25012364 ~ 25015343 (-) False AMCG00016562
TU17849 other upstream 79113 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 272209 25273664 ~ 25277478 (-) False AMCG00016579
TU18038 other upstream 751540 25752995 ~ 25754472 (-) True G14534

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046329 False 4366 mRNA 0.47 36 NC_007135.7 21372393 ~ 21512425 (-)