RNA id: AMCG00016573


Basic Information

Item Value
RNA id AMCG00016573
length 717
RNA type mRNA
GC content 0.64
exon number 3
gene id AMCG00016573
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25215067 ~ 25218658 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACGTGAGCTATCTTTTGGATAAAGAGGTGAGCATGTACCCCGGTTCTGTCAGACACTCTGGACTCAATCTTGGTGCTCAACACTTCGTCAGCCCGCCACAGTACCCGGATTATGGGCACTACCATCACGTCCCGGTGCTGAGTGGGGAAGGGGACCCCCGGGACCCCCAGCCCACACCCTCCTGGCACTACGGAACCACCCGTGAAGACTGGAGCGCTTACCCACAGATACCCCCGGGTGGGGCCCACCATCTGAGCGCCTCTCCTGGGACTGTCTGCTACAGCCCGAGCGAGTACAGCCCTGGCCCCTTGCCCCCGCTGCCCACCCAGGGTGTGATTCAGCCCCTGGGGTGCCACCCGGCGGAGCACACCGATTCCGGCAGCCAGAGGATTTACGAATGGACACGGAGGAGCGCACAGCCCGCCGCCAACACCTCGGCCCACAGCCCGACAGCCTCACGGTCTACCTTACACAACACTGAGGTGAAAATCTGGTTCCAGAACAGAAGAGCCAAGGAAAGAAAACTGGACAAGAAGAAGCAGCAGCCTCAGCCCCAGCCCGGCCCAGTCCAGAGCGCTCCACAGGGGCTCAGTCCGGTGGTACTGGGATCTGCCTCCCTGGTCCCGGGCGGTGGGGATCCTGTCCTCGACCGCGCTCAGCGCTACTGCCCCCCGGAGCCGCCCCACAGCGAGGGCATCCTGGCAGGGCTCTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048513 animal organ development biological_process
GO:0009888 tissue development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17860 lncRNA downstream 92692 25122090 ~ 25122375 (-) True G14400
TU17761 lncRNA downstream 203812 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA downstream 203812 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA downstream 204304 25008156 ~ 25010763 (-) False AMCG00016562
TU17733 lncRNA downstream 308521 24905121 ~ 24906546 (-) True G14311
TU17952 lncRNA upstream 186237 25404895 ~ 25405101 (-) True G14472
TU17955 lncRNA upstream 194658 25413316 ~ 25414098 (-) False AMCG00016591
TU17979 lncRNA upstream 298331 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 298331 25516989 ~ 25520096 (-) False G14487
TU17998 lncRNA upstream 324388 25543046 ~ 25545725 (-) True G14496
AMCG00016569 mRNA downstream 81259 25124783 ~ 25133808 (-) True AMCG00016569
AMCG00016570 mRNA downstream 107502 25106332 ~ 25107565 (-) True AMCG00016570
AMCG00016563 mRNA downstream 134574 25073170 ~ 25080493 (-) True AMCG00016563
AMCG00016565 mRNA downstream 157497 25056560 ~ 25057570 (-) True AMCG00016565
AMCG00016562 mRNA downstream 201589 25010808 ~ 25013478 (-) False AMCG00016562
AMCG00016572 mRNA upstream 1646 25220304 ~ 25221568 (-) True AMCG00016572
AMCG00016574 mRNA upstream 5407 25224065 ~ 25234275 (-) True AMCG00016574
AMCG00016575 mRNA upstream 16334 25234992 ~ 25237511 (-) True AMCG00016575
AMCG00016579 mRNA upstream 46114 25264772 ~ 25276861 (-) True AMCG00016579
AMCG00016583 mRNA upstream 60997 25279655 ~ 25282226 (-) True AMCG00016583
TU17849 other downstream 131368 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 199724 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 203289 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 332969 24881148 ~ 24882098 (-) True G14305
TU17553 other downstream 898265 24311037 ~ 24316802 (-) False AMCG00016531
TU17858 other upstream 55006 25273664 ~ 25277478 (-) False AMCG00016579
TU18038 other upstream 534337 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 862845 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 937863 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 963086 26181744 ~ 26184778 (-) False G14676

Expression Profile