RNA id: AMCG00016575


Basic Information

Item Value
RNA id AMCG00016575
length 459
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00016575
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25234992 ~ 25237511 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGAGCAGCCAGGGACAGCGTAGGGACTTCATAGCCAGGAACACAACCAGTGAAGTCCTTGAGAAATTCCCTAGCCTAAAAATTCAAAAATTGGACTGCAATTGGGGGCTGCCATTTAACTCTCGTCATCCCTCTTCAGAGAACATGAGTCTCAGTTTACAGATGAAGAGCGGCGGCGCTGTGTCTGCTGGCGGCGAGGAGCGGGGCCGGTGCGGCGGCGCCGCGGGTTCACTGCTCCGGTACAGCCCAGACGCGAAGCCCAGTAACCTGACCTGTGAGGCGTTCATTCTGGGACCAAACCGCACCTGCACCCATCCTGAAAAAGCGCTGGTTCCCCTGGAGCTCGACAGACACCAGACCCTGGAGGTGACGGCTCGGCTGCACAGCGCCAACCGCACCGTCTGTTACTGGCAGCACGGCGGCACGACAGCGTGCCTTTCACACAGAGACGCGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17860 lncRNA downstream 112617 25122090 ~ 25122375 (-) True G14400
TU17761 lncRNA downstream 223737 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA downstream 223737 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA downstream 224229 25008156 ~ 25010763 (-) False AMCG00016562
TU17733 lncRNA downstream 328446 24905121 ~ 24906546 (-) True G14311
TU17952 lncRNA upstream 167384 25404895 ~ 25405101 (-) True G14472
TU17955 lncRNA upstream 175805 25413316 ~ 25414098 (-) False AMCG00016591
TU17979 lncRNA upstream 279478 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 279478 25516989 ~ 25520096 (-) False G14487
TU17998 lncRNA upstream 305535 25543046 ~ 25545725 (-) True G14496
AMCG00016574 mRNA downstream 717 25224065 ~ 25234275 (-) True AMCG00016574
AMCG00016572 mRNA downstream 13424 25220304 ~ 25221568 (-) True AMCG00016572
AMCG00016573 mRNA downstream 16334 25215067 ~ 25218658 (-) True AMCG00016573
AMCG00016569 mRNA downstream 101184 25124783 ~ 25133808 (-) True AMCG00016569
AMCG00016570 mRNA downstream 127427 25106332 ~ 25107565 (-) True AMCG00016570
AMCG00016579 mRNA upstream 27261 25264772 ~ 25276861 (-) True AMCG00016579
AMCG00016583 mRNA upstream 42144 25279655 ~ 25282226 (-) True AMCG00016583
AMCG00016581 mRNA upstream 44723 25282234 ~ 25284427 (-) True AMCG00016581
AMCG00016578 mRNA upstream 47618 25285129 ~ 25311138 (-) True AMCG00016578
AMCG00016580 mRNA upstream 81387 25318898 ~ 25325470 (-) True AMCG00016580
TU17849 other downstream 151293 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 219649 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 223214 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 352894 24881148 ~ 24882098 (-) True G14305
TU17553 other downstream 918190 24311037 ~ 24316802 (-) False AMCG00016531
TU17858 other upstream 36153 25273664 ~ 25277478 (-) False AMCG00016579
TU18038 other upstream 515484 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 843992 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 919010 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 944233 26181744 ~ 26184778 (-) False G14676

Expression Profile