RNA id: TU17858


Basic Information

Item Value
RNA id TU17858
length 733
RNA type TUCP
GC content 0.44
exon number 5
gene id AMCG00016579
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25264772 ~ 25277478 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCACTAAGAAAAATATTGTATCTGAGTATCTGCTCAGAGTCGGTCAAAGCAAGAGAATTTAGTTTCTACATGAGCCAATGTGTTCAACTTCTCCCTTCCCTGACCACATCAATGCTGCTGCTTTCCAATAGAGGGCGCCACTGGCAGCGAGCACAAGGCTTTGATGACAGAGCTCAAAATCCTCATCCACATTGGACAACACCTCAATGTCGTCAACCTGCTGGGCGCCTGCACCAAATACGGAGGTCCCCTAATGGTGATAGTGGAGTTCTGCAAGTATGGTAACCTCTCCAACTACCTGAAGAGCAAGAGAGACGTGTTCCTCCTGCACAAGGACTCCAGCGGCCAAGCACAGCAGGACAGCGGGGGCGGCTCCACGGGGGCAGCGGAGGTGGGGGCGGCGGAGGTGGGAGCAGCAGCGGAGGCGCGGGGGGAGGAGAAGGAGCGTCTGGACAGCGTGTCCAGCACTCACAGCTCTGCCAGCTCCGGCTTCGAGGACGAGAAGAGCCTACATGACACAGCAGAGGAACAGGAGGATTCAGATGCTTTCTACAACAAACCCATAGTGATGGAGGATCTGATCTCCTACAGCTTCCAGGTGGCTCGAGGGATGGAGTTTCTGGCATCGCGGAAGGGTCTGAGGAACTCGCGCAGACTTCCTGTTCACCTCAGCCCACTTCCCCCTGCGAAGCGCACAATGAGGGGGTTTTCTTTCACACCGCAGAATAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17860 lncRNA downstream 151289 25122090 ~ 25122375 (-) True G14400
TU17761 lncRNA downstream 262409 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA downstream 262409 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA downstream 262901 25008156 ~ 25010763 (-) False AMCG00016562
TU17733 lncRNA downstream 367118 24905121 ~ 24906546 (-) True G14311
TU17952 lncRNA upstream 127417 25404895 ~ 25405101 (-) True G14472
TU17955 lncRNA upstream 135838 25413316 ~ 25414098 (-) False AMCG00016591
TU17979 lncRNA upstream 239511 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 239511 25516989 ~ 25520096 (-) False G14487
TU17998 lncRNA upstream 265568 25543046 ~ 25545725 (-) True G14496
AMCG00016575 mRNA downstream 36153 25234992 ~ 25237511 (-) True AMCG00016575
AMCG00016574 mRNA downstream 39389 25224065 ~ 25234275 (-) True AMCG00016574
AMCG00016572 mRNA downstream 52096 25220304 ~ 25221568 (-) True AMCG00016572
AMCG00016573 mRNA downstream 55006 25215067 ~ 25218658 (-) True AMCG00016573
AMCG00016569 mRNA downstream 139856 25124783 ~ 25133808 (-) True AMCG00016569
AMCG00016583 mRNA upstream 2177 25279655 ~ 25282226 (-) True AMCG00016583
AMCG00016581 mRNA upstream 4756 25282234 ~ 25284427 (-) True AMCG00016581
AMCG00016578 mRNA upstream 7651 25285129 ~ 25311138 (-) True AMCG00016578
AMCG00016580 mRNA upstream 41420 25318898 ~ 25325470 (-) True AMCG00016580
AMCG00016577 mRNA upstream 49390 25326868 ~ 25347437 (-) True AMCG00016577
TU17849 other downstream 189965 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 258321 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 261886 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 391566 24881148 ~ 24882098 (-) True G14305
TU17551 other downstream 956862 24311037 ~ 24316802 (-) False AMCG00016531
TU18038 other upstream 475517 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 804025 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 879043 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 904266 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 904266 26181744 ~ 26184778 (-) True G14676

Expression Profile