RNA id: AMCG00016597


Basic Information

Item Value
RNA id AMCG00016597
length 1185
RNA type mRNA
GC content 0.58
exon number 11
gene id AMCG00016597
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25611563 ~ 25642333 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGGAGAACAGCGAGAAGGAGAATGAGCCCCAAAACCGGGATCTCCAGCGCTCACCTGGCACTGTGTCTGTCCAGCCCGAGTCCAAGCTGCAGAGGCTGAAGCGCTCGCTCTCATTCAAGACCATGATGCGCAGCAAGAGCGTGGAGAACTTCTTCCAGAGGTCCAACAGTGAGATTCGGTTCCCCAGCGACCTCATCACAGCGCTGCCCCCGTCTCCTCCCCTGCCGCCTGATACCCCTCCTCTAAACCACGGTGACCCCTCCCAAagccccaccccctctctcagCCCCAACGCCTCCCAAAGCCCCAGCCCCTCTCTTTCCTCCAAGCCCCCAGCACAGCTCCGCCCTGTGAAGACCCACTGTTTCCAGGAATATGTCTTCCGCCGGCCCACCTACTGCCAGCTCTGCAAGCACATGATTGTTGAACTGTCCAAGCAGCAGTGCAATGGGAAGtcaggGGCATTCAAACGCAACTTCAGCTCTCCGCTGCTTGTTAACGATCAGCTAGGAGTCGTTAAGGAAGTCCCTCCTCCTGCAGTGGTGAAGAACCGCGTGGACCCTGTGTACGAAACCCTGCGCTATGGCACATCTCTGGCACAGATGAGTCGATCCAGCTTCGGCAGCGTCTCTGAGTCACCCACCAGAAGCATGggTGAGAGGAGTGAGGGGGCGGATGATGGGGAGGACAGTCAGCGCAGCACCGAAGAGGAGGGGACCCAGACGCCTGTGGCTCTCAATCCCTCTGAAACTGAGAAGGCCATATCTGAAGACAGAGTCAGCTTGAAGGCTACAAAGCGGATCGAGGTGCATGCCATACACACCTACGTAGTGCTGTACAAATTTCTCCCCCAGGAGCTGAATGACCTAGAGCTGCAGGTaatggagggagagaaaaaacatctaTTTGACTTTATTGCTGCCCCCCTTGACGTTATGTTGGTGGGGAAGAGTGGAGACAAGGTGGGCTTCTTCCCGGCCAACTTTGTGCAGCGGGTGAGGCCGGGGGAGAGGGTGTGGAGGGTCACCCAGTCCTTCCATGGCAACCGCGAGCTTGGACAGATGACCGTGAAAGAGTCCCAGATCTGCGTGGGGAAGAATGAGGAGGTGAACGGCTTTCTGAGGCTGACCAGCGGGAAGAAGCGTGGCCTAGTCCCTTGCGACCTGCTGGAGGAGATCTGA

Function

GO: NA

KEGG:

id description
K23712 STAC2; SH3 and cysteine-rich domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18009 lncRNA downstream 2504 25604780 ~ 25609059 (-) True G14507
TU17998 lncRNA downstream 65838 25543046 ~ 25545725 (-) True G14496
TU17979 lncRNA downstream 91467 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA downstream 91467 25516989 ~ 25520096 (-) False G14487
TU17955 lncRNA downstream 197465 25413316 ~ 25414098 (-) False AMCG00016591
TU18019 lncRNA upstream 29971 25672304 ~ 25675200 (-) True G14517
TU18107 lncRNA upstream 275697 25918030 ~ 25921548 (-) True G14578
TU18115 lncRNA upstream 329453 25971786 ~ 26022263 (-) True G14585
TU18117 lncRNA upstream 331201 25973534 ~ 25979563 (-) True G14587
TU18197 lncRNA upstream 455395 26097728 ~ 26098972 (-) True G14650
AMCG00016594 mRNA downstream 127853 25449909 ~ 25483710 (-) True AMCG00016594
AMCG00016596 mRNA downstream 161811 25439336 ~ 25449752 (-) True AMCG00016596
AMCG00016595 mRNA downstream 172788 25433834 ~ 25438775 (-) True AMCG00016595
AMCG00016590 mRNA downstream 187904 25421283 ~ 25423659 (-) True AMCG00016590
AMCG00016591 mRNA downstream 191192 25413574 ~ 25420371 (-) True AMCG00016591
AMCG00016600 mRNA upstream 34236 25676569 ~ 25703327 (-) True AMCG00016600
AMCG00016599 mRNA upstream 63748 25706081 ~ 25726547 (-) True AMCG00016599
AMCG00016601 mRNA upstream 182413 25824746 ~ 25825846 (-) True AMCG00016601
AMCG00016614 mRNA upstream 462583 26104916 ~ 26117450 (-) True AMCG00016614
AMCG00016617 mRNA upstream 505177 26147510 ~ 26149543 (-) True AMCG00016617
TU17858 other downstream 334085 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 527864 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 596220 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 599785 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 729465 24881148 ~ 24882098 (-) True G14305
TU18038 other upstream 110662 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 439170 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 514188 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 539411 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 539411 26181744 ~ 26184778 (-) True G14676

Expression Profile