RNA id: AMCG00016616


Basic Information

Item Value
RNA id AMCG00016616
length 897
RNA type mRNA
GC content 0.69
exon number 1
gene id AMCG00016616
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26156521 ~ 26159922 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGCACCCCTATGAGCCCTGGTTCCGCCCAGCGCCCCCTGGTGGCACTGGTGAGGACATGGGCGTACCGTCGTGGTGGGAGCTGCACGCTGGCACCAGCAGCTGGATGGAGCTGccagggggggcaggggggctgCAGGGTGCTGGGCAGGGAGGGGGCATGAGCCTGCAGTCTCTGGGCCCCTACAGCTCTGACCCCCAGCTGTGCGCACCCCCTCCCTCGCACATGGCCCCCAGCTCACCGCAGCTCTTCTCGCAGGACAGCTACAAGCAGCTGGAGGCAGGGGTGGGGGTtggagtgggagtgggggggcaggagcagcagcacCCCCTAGAAGAACCCCTGGAGAGTAGCGGGCGTCCCAAAACCCAGCGCCGGTCTGCCCCCCGCGGCTCTGGCCAGGCTGTCTGCCGCTGCCCCAACTGCCTGGACGCCGAGCGCATGGGGCCCTGCGgcgggggggctggggggggagATGGGGGAAAGAAGAAGCACCTGCACAACTGCCACATCCCGGGCTGTGGCAAGGCCTACGCCAAGACCTCGCACCTGAAGGCTCACCTGCGCTGGCACAGTGGCGACCGGCCCTTTGTATGCAACTGGCTGTTCTGTGGGAAGCGCTTCACACGCTCCGATGAGCTGCAGCGCCACCTGCAGACGCACACAGGCACCAAGAAGTTCACCTGCAGCGTGTGCCACCGCGTGTTCATGCGCAGCGACCACCTTGCCAAGCACACACGCACCCATGAGCCCCCCCGCGGCGCCGACGATGACAACGAGACTGCGgccccaccccccccctccagcACAGCTGCTGTCGCCCCCGGGCCCCTTGATGCCCCTCTCAAGCCCAAGCGGGAGCCGGACACCAGTGGCCCTGGCCAGGCTAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18219 lncRNA downstream 9942 26148305 ~ 26149084 (-) False AMCG00016617
TU18197 lncRNA downstream 60054 26097728 ~ 26098972 (-) True G14650
TU18115 lncRNA downstream 136763 25971786 ~ 26022263 (-) True G14585
TU18117 lncRNA downstream 179463 25973534 ~ 25979563 (-) True G14587
TU18107 lncRNA downstream 237478 25918030 ~ 25921548 (-) True G14578
TU18227 lncRNA upstream 21822 26181744 ~ 26184778 (-) False G14676
TU18228 lncRNA upstream 21822 26181744 ~ 26184778 (-) False G14676
TU18283 lncRNA upstream 115255 26275177 ~ 26303459 (-) True G14723
TU18337 lncRNA upstream 235010 26394932 ~ 26395425 (-) True G14765
TU18347 lncRNA upstream 265110 26425032 ~ 26425250 (-) True G14775
AMCG00016615 mRNA downstream 3576 26151611 ~ 26155450 (-) True AMCG00016615
AMCG00016617 mRNA downstream 9483 26147510 ~ 26149543 (-) True AMCG00016617
AMCG00016614 mRNA downstream 41576 26104916 ~ 26117450 (-) True AMCG00016614
AMCG00016601 mRNA downstream 333180 25824746 ~ 25825846 (-) True AMCG00016601
AMCG00016599 mRNA downstream 432479 25706081 ~ 25726547 (-) True AMCG00016599
AMCG00016624 mRNA upstream 52464 26212386 ~ 26215060 (-) True AMCG00016624
AMCG00016623 mRNA upstream 79160 26239082 ~ 26241390 (-) True AMCG00016623
AMCG00016629 mRNA upstream 144993 26304915 ~ 26309363 (-) True AMCG00016629
AMCG00016628 mRNA upstream 179571 26339493 ~ 26343614 (-) True AMCG00016628
AMCG00016627 mRNA upstream 213097 26373019 ~ 26374602 (-) True AMCG00016627
TU18183 other downstream 75859 26081503 ~ 26083167 (-) True G14637
TU18038 other downstream 404554 25752995 ~ 25754472 (-) True G14534
TU17858 other downstream 881548 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 1075327 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 1143683 25012364 ~ 25015343 (-) False AMCG00016562
TU18225 other upstream 21822 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 21822 26181744 ~ 26184778 (-) True G14676
TU18278 other upstream 79160 26239082 ~ 26241106 (-) False AMCG00016623
TU18405 other upstream 267417 26427339 ~ 26518279 (-) False G14816
TU18407 other upstream 267417 26427339 ~ 26520397 (-) True G14816

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000365_00326334_00327173.mRNA True 1526 mRNA 0.54 1 CI01000365 326075 ~ 327600 (-)
tiger barb (Puntius tetrazona) TU11459 True 1655 lncRNA 0.46 2 NC_056699.1 29496887 ~ 29500697 (-)